Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H24
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 27 1.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 2.3
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 26 2.3
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 3.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 3.1
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 25 7.1
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.1
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 24 9.4
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 24 9.4
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 243 GHCTLFTSGRYVLAGTNNTNDDSGVMRSVKRLV 341
G C++F S Y L+GT N +G + +R +
Sbjct: 258 GFCSVFISSAYSLSGTENIGTAAGNTSNPQRAI 290
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 199 PVAGLSLVQPGYSQLVTVHCSPAAGMC*QAPTIQTTTVVLCVQ*NGW 339
PV G++ + P + C + G+C +P T+ V C + W
Sbjct: 948 PVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPNSGLTSHVTCAEKANW 994
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 2.3
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +3
Query: 132 VVEKSDSRAVHERFPHALLFGGTCGGSIISPTW--ILTAGHCTLFTSGRYVLAGTNNTND 305
+ K D H+ HA GG CGG + T A TL S Y+ +
Sbjct: 209 ITGKIDEPTRHDIIRHACPGGGACGGMYTANTMASCAEAMGMTLPGSSSYLAGSPEKFAE 268
Query: 306 DSGVMRSVKRLVI 344
++KRL++
Sbjct: 269 CEAAGSAIKRLLV 281
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 148 SDFSTTVFCSTAGLLLISDNFCF 80
SDFS + FC LLL+ ++C+
Sbjct: 938 SDFSISQFCYLKKLLLVHGSWCY 960
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 182 IAFRRHLWRVYH*SNLDTHSWSLYTVHQRP 271
+A ++HL +NLDT+S Y +H+ P
Sbjct: 741 LAEKKHLKSQLMVANLDTYSLDCYEIHEFP 770
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 211 DPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRRS 65
D P +PP+ + N S + ++ S T S + L + + CF RRS
Sbjct: 435 DKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTLKIPDSDICFTRRRS 483
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 210 SIISPTWILTAGHCTLFTSGRYV 278
++ +PTW+ H L TSG+ +
Sbjct: 325 TVTNPTWLSLGNHFVLATSGQNI 347
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 176 RESLMHCSRVRLLYD 132
+ESL+HC+R+R + D
Sbjct: 65 KESLLHCNRLRRIQD 79
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 214 IDPPQVPPKSNACGNL 167
+ PP PP+SNA G++
Sbjct: 336 LPPPPPPPRSNAAGSI 351
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 331 FTERITPLSSFVLLVPANTYRPLVNSVQ*PAVSIQVG 221
FT PL++ + LV AN +RP PA+ I G
Sbjct: 417 FTSVGVPLANVMGLVSANIFRPQDAPKYVPALGITAG 453
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/43 (25%), Positives = 16/43 (37%)
Frame = +3
Query: 198 TCGGSIISPTWILTAGHCTLFTSGRYVLAGTNNTNDDSGVMRS 326
+CGG W + G G T N+DS ++ S
Sbjct: 73 SCGGDKFIQVWDVNTGKVDRRLGGHLAQINTIRYNEDSSILAS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,280
Number of Sequences: 5004
Number of extensions: 35799
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -