Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H24
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein si...    30   0.63 
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    30   0.63 
At4g18520.1 68417.m02745 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    28   3.4  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    27   5.9  

>At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 [Nicotiana tabacum]
          Length = 501

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 188 FRRHLWRVYH*SNLDTHSWSLYTVHQRPVCVSRHQQYKRRQWCYAFSETAGNPSA 352
           F RH W ++       +  SL   + RP+  ++  +Y+ R+WC   ++ AGN +A
Sbjct: 337 FERH-WGIFSYDGAVKYPLSLG--NGRPLVPTKGVRYQAREWCVLSTQAAGNGAA 388


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 224 WTNDRPATGASEKQCVRESLMHCSRVRLLYDCF 126
           W ND P    SE+Q   E L  C  + +   CF
Sbjct: 213 WLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 245


>At4g18520.1 68417.m02745 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 581

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +3

Query: 69  LLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILTAGH 248
           L+Q + ++SEI    + +  T+   SDSR   E   H  L           P + L +G 
Sbjct: 6   LIQPRLRISEIPVTQSYKSPTICYSSDSRTKREEQRHVRL-----------PGFRLVSGK 54

Query: 249 CTLFTSGRYVLAGTNNTNDDS 311
              F SG     G N   DDS
Sbjct: 55  RASFDSGFSGFKGENVNQDDS 75


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 60  ANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILT 239
           A  LLQ   ++   SS  ++     +  S S ++    PH L  G  CGG   S    L 
Sbjct: 329 ATALLQKAAQMGAASSGGSLLHGLGIVSSTSTSIDAIVPHGLGLGLPCGGESSSGLKELM 388

Query: 240 AGHCTLF 260
            G+ ++F
Sbjct: 389 MGNSSVF 395


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 270 RYVLAGTNNTNDDSGVMRSVKRLVIHPLFSVGPYWLDTDEFDI 398
           RYV+ G      +S     +K+L IHP+ S G Y +  +  DI
Sbjct: 352 RYVIHGIVKVLQNSP---DLKKLTIHPMGSAGSYPIPEEHIDI 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,649,663
Number of Sequences: 28952
Number of extensions: 196114
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)