Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H23
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0015 + 108338-109186                                             29   3.0  
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981...    27   9.1  
04_03_0515 + 16698589-16701066                                         27   9.1  

>07_01_0015 + 108338-109186
          Length = 282

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 378 EHHDKQLRNARRIAFQHQNTTP--CVVAMIKLTKNQARLF 491
           +HH    +N +++  Q  N++P  C+  +IK ++N+ARLF
Sbjct: 144 DHH----QNHQQLQLQGTNSSPNSCIATIIKESRNKARLF 179


>08_02_1331 +
           26195949-26196132,26196606-26196710,26197270-26198127,
           26198669-26199458,26200240-26200329,26200636-26200712,
           26200797-26201383
          Length = 896

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 392 TIEKCAENCISTPEYNPVCGSDDKTYQKPG 481
           +IEKC E  + T E    C +  K  +KPG
Sbjct: 228 SIEKCLELYLETEEREWACENCSKVVEKPG 257


>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 515 FDSTIL-GTK*SCLVFGKFYHRYHTRGCI 432
           FDS +L G K   + +G   H Y T GCI
Sbjct: 352 FDSMVLKGPKPDVISYGALLHGYATAGCI 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,093
Number of Sequences: 37544
Number of extensions: 302708
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)