Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H21
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.6  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   8.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   8.0  

>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 372 TVYSTPGSETSAYAEKVKSSPGENEQRYCDS*IRMERASQRFTS 503
           T + T  S T+   E   +SP +NEQ   D+ I  +R  QR+T+
Sbjct: 425 TPFPTSSSSTNGTLEPNANSPKKNEQ---DAWIAKKRRQQRYTT 465


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 194 SSKRYRTRPGTDLAESPTPSDHRTITARLFSFGSSIAGKAGKPGITFKSKGSLHVDPQ 21
           SS  + +R GT+ + + T    RT++ R  + GSS+        ++ KS G++    Q
Sbjct: 19  SSNTHLSREGTNRSSNVT----RTVSGRKSNHGSSLTDTGESDQLSLKSFGAIRQPSQ 72


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 66  RFASFTSNG*TKRKKTCSNST 128
           RF SFTSNG T  K T  ++T
Sbjct: 720 RFPSFTSNGITTDKPTLPDTT 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,928
Number of Sequences: 5004
Number of extensions: 63445
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)