Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H21
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337...    33   0.29 
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    30   2.1  
03_06_0723 + 35755407-35755457,35755653-35756321                       28   6.3  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    28   8.3  

>06_01_0475 +
           3375757-3375800,3375898-3376168,3376252-3376440,
           3376816-3376989,3378039-3378218,3378565-3378719,
           3379509-3379599,3380023-3380186,3380791-3380845,
           3380944-3381066,3381160-3381255,3381706-3381833,
           3382407-3382466,3382607-3382896,3383127-3383237,
           3383318-3383395,3383487-3383659,3384192-3384296,
           3385017-3385112
          Length = 860

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 25  GSTCSEPLDLNVIPGLPALPAMDEPKEKRRAVI--VRWSDGVGDSARSVPGRVLYLLEEQ 198
           G+ CS  +  ++ P +  L    EP  K++A +  +R    V D A +  G  + LL+E+
Sbjct: 139 GNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAENFMGSAVSLLKEK 198

Query: 199 HH 204
           HH
Sbjct: 199 HH 200


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 544  LGGELDSVLVNHQTVPKD-QTSIEIKDLQPNSM-YFLQVQTISQFG 675
            LG  +  V+  H+ +  +   S E+KDLQ NS+ YF+Q +T S+ G
Sbjct: 1828 LGNGIGDVISVHEKIEDNIHESAELKDLQDNSLVYFIQDET-SELG 1872


>03_06_0723 + 35755407-35755457,35755653-35756321
          Length = 239

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 185 RYRTRPGTDLAESPTPSDHRTITARLFSFGSSIAGKAGKPGITFKSKGSLH 33
           + R RPG+D  E+   S   T   R   F      +  +P +TF+++G+ +
Sbjct: 160 KLRWRPGSDSFEAEIMSWLATPLTRTIKFADVRPPETNRPFVTFRAEGNFY 210


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 SCCKCVWYKRIFFTKPTVYSTPGSETSAYAEKVKSSP 434
           SC   +  +R F+   +V    G  +SAY++K  SSP
Sbjct: 824 SCLDTMTVERAFYNPASVNEIEGVGSSAYSKKYHSSP 860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,265
Number of Sequences: 37544
Number of extensions: 410173
Number of successful extensions: 1026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)