Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H21
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   53   2e-07
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.032
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             35   0.074
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               33   0.30 
SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)                   33   0.30 
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         31   1.2  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)                29   4.9  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         28   6.4  
SB_59330| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  28   6.4  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          28   8.5  

>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 3/196 (1%)
 Frame = +1

Query: 112  RAVIVRWSDGVGDSARSVPGRVLYLLEEQHHLGPKYEESRLGEWNLLLRTNKTKVSLRNL 291
            R++ V W+    +S       V      QH L       ++G+W  L +T   ++ + + 
Sbjct: 687  RSLTVSWNISAPESKDGWVYVVQQRTARQHEL-----PQQMGKWVPLTQTRSQQLKIPD- 740

Query: 292  LKPGR--WYRFRVAAVNVSGTRGFSSPSPQFTXXXXXXXXXXXXXXXXXXXXXNNGTVTV 465
              PG   W +FRVA V    +  F++ +  F                            +
Sbjct: 741  --PGSALWCQFRVAVVQQDSSSNFTTSTLTFIPPERPGPVRDFRVTGKHIL---KNKAQI 795

Query: 466  KLEWKEP-HSDLPVVRYKVFWSRRVRGLGGELDSVLVNHQTVPKDQTSIEIKDLQPNSMY 642
             + W++P +SDLPV +Y+V+WS+R+     +   +  +   VP  +    I  L+ N+ Y
Sbjct: 796  SIAWRKPENSDLPVSKYRVYWSKRLDTYSTDWQHLREHRGRVPATRHKAIIHGLELNTTY 855

Query: 643  FLQVQTISQFGVGKLR 690
             + +Q IS++   +L+
Sbjct: 856  HIAIQAISRYQGKRLK 871


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +1

Query: 463 VKLEWKEPHSDLPVVR-YKVFWSRRV-RGLGGELDSVLVNHQTVPKDQTSIEIKDLQPNS 636
           +++ W  P     ++R Y+V +S+ V R L  +    +   +T   + TS+ + D++ ++
Sbjct: 618 IRVRWDTPMEPNGIIREYRVLYSKVVSRPLANDTSEFVHMLRTNNSNVTSLYLTDMESDT 677

Query: 637 MYFLQVQTISQFGVG 681
           +Y+  V+ I+  G+G
Sbjct: 678 LYYFWVRAITAVGIG 692


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   QRCCNHGCGSTCSEPLDLNVIPGLPALPAMDEPKE 105
           ++CC++GCG TC+ P+      G P +  + +P E
Sbjct: 595 KKCCSNGCGRTCTSPVRQACPEGQPVVMCLRDPCE 629


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 292  LKPGRWYRFRVAAVNVSGTRGFSSPS 369
            L+PG  Y+FRVAA+NV G   FS  S
Sbjct: 1008 LQPGTAYKFRVAAINVCGRGPFSDVS 1033


>SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)
          Length = 399

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 445 NNGTVTVKLEWKEPHSDLP-VVR-YKVFWSRRVRGLGGELDSVLVNHQTVPKDQTSIEIK 618
           N  T ++ + W     ++  V+R Y VF+  R  G+      +   + ++P   T +EIK
Sbjct: 13  NTSTFSINVTWSALKENVSGVLRGYTVFYRMRDAGI------ITTVNVSLPIPNTHVEIK 66

Query: 619 DLQPNSMYFLQVQTISQFGVG 681
           DL+ N+ Y  +V   +  G G
Sbjct: 67  DLEVNTSYIFEVAAFTGAGHG 87


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 250  LLRTNKTKVSLRNLLKPGRWYRFRVAAVNVSGTRGFSSPSPQFT 381
            L+  +  K+++  LL PG  YRFR+ A N  G   +SS S + +
Sbjct: 1000 LISADLRKMTVEGLL-PGTSYRFRIMATNDVGNSPYSSSSQEIS 1042


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 448  NGTVTVKLEWKE-PHSDLPVVRYKVFWSRRVRGLGGELDSVLVNHQTVPKDQTSIEIKDL 624
            NG+ +++++W   P   +  V      S R RG G       V +Q+ P   TSI +  L
Sbjct: 1077 NGSTSIQVDWNPVPIVFIHGVLVGYLVSYRKRGTGA-----FVTNQSAP-GTTSILLTGL 1130

Query: 625  QPNSMYFLQVQTISQFGVG 681
            QP S+Y + V   +  G G
Sbjct: 1131 QPYSVYDIHVSAFTIKGYG 1149



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +1

Query: 448  NGTVTVKLEWKEPHSDLP---VVRYKVFWSRRVRGLGGELDSVLVNHQTVPKDQTSIEIK 618
            NG+ +++++W +  S L    ++ Y V +  R  G G     V+  ++T P   TSI + 
Sbjct: 1539 NGSTSIQVDWDKVPSPLVHGILMGYLVTY--RKSGTG-----VMAENETAP-GTTSILLT 1590

Query: 619  DLQPNSMYFLQVQTISQFGVG 681
             LQP  +Y +QV   +  G G
Sbjct: 1591 GLQPYFLYDIQVSAFTVKGCG 1611


>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
          Length = 1663

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 214  KYEESRLGEWNLLLRTNKTKVSLRNLLKPGRWYRFRVAAVNVSGTRGFSSPSPQF 378
            +Y+E+ +  W   +     + +L + L PG  Y+FRV+A N   + G S PS  F
Sbjct: 1007 EYKETGVSVWQAAVPFVAGESTLIDDLTPGATYQFRVSANN---SIGISRPSEPF 1058


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 568 LVNHQTVPKDQTSIEIKDLQPNSMYFLQVQTISQFGVG 681
           +V + TVP    +  + DL  +S+Y + ++ +S+ G G
Sbjct: 231 VVKNMTVPVGTNTATLTDLTGDSLYVITIRGVSKHGAG 268


>SB_59330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 308 QRPGFNRLRKETFVLFVRNSKFHSPSLDS 222
           ++PG   +R+E F+L ++NS   +  LDS
Sbjct: 16  EKPGNEDIREEVFILTIKNSTSKTQPLDS 44


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 79  LPAMDEPKEKRRAVIVRWSDGVGDSARSVPGRVLYLLEEQHHLGPKYEESRL 234
           LP+ DE +    A I +    V D +  V G  + LL   HH+ PK+ E  L
Sbjct: 51  LPSSDEARLVDDAFI-KICHMVNDMSMQVRGEAVGLLGSLHHVSPKFLEQTL 101


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 1    QRCCNHGCGSTCSEPLDLNVI 63
            Q+CC+ GC   C+ P DL+++
Sbjct: 1585 QKCCSDGCTMICTNP-DLDIV 1604


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 666  TNRLDLQKVHGVWL*IFYFYRGLVLGHCLMIDKNRIQLSTQSPYTSTPEY 517
            +N      + G W   F F++ +VL  CL  DKN + +     Y   P +
Sbjct: 2383 SNEPQTMPLPGEWEEKFDFFQKMVLLRCLRPDKNFVTVKLGKKYIEPPPF 2432


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 460  TVKLEWKEPHSD--LPVVRYKVFWSRRVRGLGGELDSVLVNHQTVPKDQTSIEIKDLQPN 633
            +V+L W  P SD   P++ YKV           E+ SV           TSI I +L+PN
Sbjct: 1135 SVRLRWTPPLSDNGSPILDYKV-----------EVSSVFAAEGI---SSTSILIPELEPN 1180

Query: 634  SMYFLQVQTISQFGVG 681
            + Y  +V   +  G+G
Sbjct: 1181 TKYLARVAARNAAGLG 1196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,063,251
Number of Sequences: 59808
Number of extensions: 479341
Number of successful extensions: 1251
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)