Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H21
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54750.2 68416.m06058 expressed protein                             31   0.98 
At3g54750.1 68416.m06057 expressed protein                             31   0.98 
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    29   4.0  

>At3g54750.2 68416.m06058 expressed protein 
          Length = 589

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 28  STCSEPLDLNVIPGLPALPAMDEPKEKRRAVIVRWSDGVGDSARSVPGRVLYLLEEQHHL 207
           S  +EP  +N+  GLP +P   +P+ +    ++  +    D+A  +PG V+    +  HL
Sbjct: 517 SFVTEPTSVNLNIGLPQVPEKTDPESR----VIEGTGETNDNASDIPGSVICPQLQSGHL 572


>At3g54750.1 68416.m06057 expressed protein 
          Length = 589

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 28  STCSEPLDLNVIPGLPALPAMDEPKEKRRAVIVRWSDGVGDSARSVPGRVLYLLEEQHHL 207
           S  +EP  +N+  GLP +P   +P+ +    ++  +    D+A  +PG V+    +  HL
Sbjct: 517 SFVTEPTSVNLNIGLPQVPEKTDPESR----VIEGTGETNDNASDIPGSVICPQLQSGHL 572


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +1

Query: 73  PALPAMDEPKEKRRAVIVRWSDGVGDSARSV-----PGRVLYLLEEQHHLGPKYEE 225
           P  P +++ +EK+++V+V  S+  GD  R +       + +Y+  E+  LG K EE
Sbjct: 154 PLFPCLNKVEEKKKSVVVTVSENHGDGRRDLWKKKNVRKEVYITAEE-FLGKKQEE 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,216
Number of Sequences: 28952
Number of extensions: 336707
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)