Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H20
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    29   0.33 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   0.57 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.0  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   3.0  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   4.0  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   5.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   9.3  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 125 SMGFSAYCDGVPDGKAFGCTPYRSTVPPTR 36
           S  F A  D   DGK FG +  +S +PPTR
Sbjct: 317 SFVFQAQNDMQDDGKGFGISNLKSFLPPTR 346


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 128 GEDVFDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEK 304
           G++ ++  +   E  S+  EL++   D +RK  T   SSQ  +  E K+  P+ +F  K
Sbjct: 50  GKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPI-AFQHK 107


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 65   GYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSEL 169
            GY+ + F  E+H N LR  +   + F    FW+ L
Sbjct: 975  GYSVLSFFRENHKNSLRKSW---EAFKRRAFWTSL 1006


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   HDRSICSLSCCGRVGGTVLRYGVQP 75
           H   +  +   GR+GGT + YG  P
Sbjct: 29  HGAKVALIEASGRLGGTCVNYGCVP 53


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 238 IVSRHRRQRIQGDYTFNLL**EGHRCQSPDRSSDGASC 351
           ++S++  +R++ DY  NL+   GH   S + SS    C
Sbjct: 81  VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLC 118


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 167 LSSELRELDNMLADFYRKF 223
           L S+L EL ++L  FY+KF
Sbjct: 421 LESQLVELQSLLTQFYQKF 439


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +3

Query: 114  EAHTSARTSSIPVGSGPNSPASYASWXXXXXXXXXXXXXXXXXLKASKAT 263
            E  +SA TSS+     P S +S +SW                   +S AT
Sbjct: 931  ETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 ELSSELRELDNMLADFYRKFPT 229
           EL +EL   DN+LA   R+F T
Sbjct: 590 ELKAELNLRDNLLASMQREFET 611


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 26  LAAAVSAAPYYGMGYNQMPFHPEHHH 103
           ++ A ++AP+   GY     HPE+H+
Sbjct: 194 MSFANTSAPFSTKGYKMKYKHPEYHY 219


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 41  SAAPYYGMGYNQMPFHPEHHHNRLRSP 121
           S   Y+    NQ PF P  HH  L +P
Sbjct: 119 SPTSYHACSNNQSPF-PHSHHPPLHNP 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,177
Number of Sequences: 5004
Number of extensions: 36149
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)