Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H20
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           31   0.56 
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718...    28   3.9  
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333...    27   6.9  
05_04_0202 - 19010953-19013355                                         27   6.9  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  YGMGYNQMPFHPEHHHNRLRSPY 124
           Y   Y+Q PFHP HHH     P+
Sbjct: 148 YNPYYHQEPFHPPHHHQYNPEPH 170


>01_05_0369 -
           21468204-21468595,21471417-21471606,21471680-21471867,
           21484028-21484580
          Length = 440

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 178 ATRVGQHARRLLQKVPDARVIVSRH--RRQRIQGDYTFNLL**EGHRCQSPDRSSDGAS 348
           AT  G  AR   Q+ P+A     RH  +R R+ GD+  N     G  C       DGA+
Sbjct: 101 ATSAG--ARETRQRRPEAEQWRQRHCCQRGRVSGDFPTNRRRRRGRGCTCEAEGEDGAA 157


>12_02_0723 -
           22532379-22532902,22533060-22533135,22533195-22533380,
           22533459-22534323,22534740-22534918,22535168-22535542
          Length = 734

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 401 MS*HPNNSSVHRPRTYEQLAPSEDRSGL*QRCPSHQRRLKV 279
           +S H +N S   P   EQL+  ED SG+ +   +H  +L++
Sbjct: 453 LSLHNSNKSYASPEAREQLSKLEDCSGMDKNHLNHLDKLRL 493


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 81  LSIRNTITIG*EAHTSARTS-SIPVGSGPNSPA 176
           LS   T   G E  T  +TS  +PVG GP SPA
Sbjct: 119 LSFLLTDASGAEIRTHRKTSFRVPVGVGPGSPA 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,582
Number of Sequences: 37544
Number of extensions: 269780
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)