Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H20
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar t...    29   1.4  
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    29   1.9  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    29   1.9  
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)...    29   1.9  
At5g67150.1 68418.m08465 transferase family protein similar to a...    28   2.5  
At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein...    28   3.3  
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    28   3.3  
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    27   5.8  
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf...    27   5.8  
At3g05680.1 68416.m00634 expressed protein                             27   5.8  
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    27   5.8  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    27   7.6  

>At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar to
           SP|P46656 Adrenodoxin, mitochondrial precursor (Adrenal
           ferredoxin) from Mus musculus, SP|P10109 Adrenodoxin,
           mitochondrial precursor (Hepatoredoxin) from Homo
           sapiens, SP|P29330 Adrenodoxin from Ovis aries; contains
           Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding
           domains; identical to cDNA GI: 28192430
          Length = 197

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 236 SSSQGIEGNEYKVTIPLTSFDEKDIVVKARTGLLMVQAVHKYEGDVQ 376
           SS  G E  E K+TI     D ++I VK   G+ +++A H+ + D++
Sbjct: 70  SSENGDEETE-KITIIFVDKDGEEIPVKVPIGMSVLEAAHENDIDLE 115


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 32  AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 124
           A +  +PYY  GY+ Q P  P  HH+ L  PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 50  PYYGMGYNQMPFHPE-HHHNRLRSPYF 127
           PY    +   P++P+ HHH R  SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 32  AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 124
           A +  +PYY  GY+ Q P  P  HH+ L  PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 50  PYYGMGYNQMPFHPE-HHHNRLRSPYF 127
           PY    +   P++P+ HHH R  SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232


>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 366

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 149 GRFWSELSSELR-ELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKD 307
           G  WS+++S L    DN + + +          +GI+ N +K    + SF +KD
Sbjct: 86  GNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKD 139


>At5g67150.1 68418.m08465 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 137 VFDTGRFWSELSSELRELDNML-ADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKDIV 313
           V D   FWS  ++      N   AD  RKFP        ++G EY + IPL   +  + V
Sbjct: 169 VADGSSFWSFFNTWSEICFNGFDADHRRKFPPLLLRGWFLDGIEYPIRIPLPETETPNRV 228

Query: 314 V 316
           V
Sbjct: 229 V 229


>At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein
           similar to SP|O43196 MutS protein homolog 5 {Homo
           sapiens}; contains Pfam profile PF00488: MutS domain V
          Length = 321

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 DTGRFWSELSSELRELDNMLADFYRK 220
           +T RF+   +S+ RELDN+L D Y K
Sbjct: 4   ETQRFFYH-TSKTRELDNLLGDIYHK 28


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1218

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 26   LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 187
            L    +  PY+     Q   HP  HH      Y+  DV D  R W+   ++ RE
Sbjct: 1124 LVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDR-RMWTRERTKARE 1176


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 95  VPDGKAFGCTPYRSTVPP 42
           V DGK + C+P + TVPP
Sbjct: 360 VKDGKDWDCSPLQPTVPP 377


>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 417

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 446 PDCKSNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 324
           P   S+++  L S  +S H N  + HRP      +PS + S
Sbjct: 199 PSIVSSYKKALSSKLLSNHSNTRNPHRPTKSLSCSPSSNPS 239


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +2

Query: 131  EDVFDTG---RFWSELSSELRE-LDNMLADFYRKFPTPASSSQGIEGNEYKVTIP 283
            +D++  G   +FW E    L E L        RK PT  SSS+  +G    V IP
Sbjct: 1400 DDLYQRGLEDKFWWECPETLPERLPQSSLPAKRKLPTLESSSRRAKGENSSVDIP 1454


>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 95  HHHNRLRSPYFGEDVFDTGRFWSELSSELRELDNM 199
           H+H+  R P    D++D   F S LS+++R +D +
Sbjct: 193 HYHSIWRDPSKFGDIYDEEFFVSTLSNDVRVVDTI 227


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
            SP|O43520]; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1228

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 26   LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 187
            L    +  PY      Q   +P  HH      Y+G D+ D  R W+   ++ RE
Sbjct: 1134 LVTVAAVLPYVAHIAFQRFLNPLDHHIIQEIKYYGRDIED-ARLWTRERTKARE 1186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,162,363
Number of Sequences: 28952
Number of extensions: 202467
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)