Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H19
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234...    29   4.1  
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066     28   5.4  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    27   9.5  

>11_06_0213 -
           21321676-21322069,21322311-21322507,21322818-21323477,
           21323522-21323578,21324741-21324848
          Length = 471

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 568 YENHFDEDGHGACLAKVTWTPQFGAQNSLPW 476
           ++ HFD +GHG    +  W  ++G + +  W
Sbjct: 375 WDEHFDPNGHGVKQGETWWAGKYGDRWNRTW 405


>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
          Length = 489

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 568 YENHFDEDGHGACLAKVTWTPQFGAQNSLPWFL*VLXSLPHTGLYSG 428
           Y++H+  DGH      V W P  G Q+ +P    V+ +L H  + SG
Sbjct: 123 YDSHYPTDGH------VVWDPITGEQHRIP---NVMDALTHPAVISG 160


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 408 AENCISTPEYNPVCGSDXKTYKNQGRLFCAPNCGVQV-TLARQAPCP 545
           A+ CI T   N   GS  +T+KN+     +P   +Q  T +  A CP
Sbjct: 318 AQGCIYTVSVNSHTGSLSRTHKNKSNKSKSPVTTIQYRTFSLVARCP 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,740
Number of Sequences: 37544
Number of extensions: 351706
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)