Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H18
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   0.14 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   1.8  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    23   5.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    23   7.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    23   7.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    22   9.4  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 0.14
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 72  IFGRTSPWYHDDNPWSLSYFSLFQ 1
           I G+ S WYHDD  W++ Y   F+
Sbjct: 200 IGGKKSSWYHDD-IWNMKYLPKFK 222


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 91  IVPCVRNLRANKSLVPRR*PLEFVIF 14
           IVPC+  +  +  ++P R   EF+ F
Sbjct: 756 IVPCISGVMLHSKIIPERKNSEFLSF 781


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  TSPWYHDDNPWSLS 19
           TSPW ++ N W+++
Sbjct: 297 TSPWLNEQNVWNVA 310


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 54  DLFARRFRTHGTIHF 98
           DLFAR  +T G  HF
Sbjct: 463 DLFARTGKTDGAAHF 477


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 60   TSPWYHDDNPWSLSY 16
            ++PW   DN W++ Y
Sbjct: 1245 STPWSEMDNEWAIMY 1259


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 92  DSSMCAESSGEQVPGTTTIT 33
           D +  + SSGE VP  +T+T
Sbjct: 533 DETAVSASSGESVPTDSTLT 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,566
Number of Sequences: 5004
Number of extensions: 4455
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)