Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H18
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0310 - 16669565-16669822,16670558-16670794                       27   1.5  
03_01_0290 + 2246791-2247027,2248089-2248346                           27   1.5  
08_02_1270 + 25757731-25757851,25758147-25758248,25758322-257583...    25   6.2  

>10_08_0310 - 16669565-16669822,16670558-16670794
          Length = 164

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTI 92
          M    G R  TRDLFAR FR  G I
Sbjct: 1  MPAGHGLRARTRDLFARPFRKKGYI 25


>03_01_0290 + 2246791-2247027,2248089-2248346
          Length = 164

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTI 92
          M    G R  TRDLFAR FR  G I
Sbjct: 1  MPAGHGLRARTRDLFARPFRKKGYI 25


>08_02_1270 +
           25757731-25757851,25758147-25758248,25758322-25758386,
           25758722-25759192
          Length = 252

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 47  TTTITLGVCHILACF 3
           TT + +G  HILACF
Sbjct: 196 TTGVRIGAAHILACF 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,889
Number of Sequences: 37544
Number of extensions: 29722
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)