Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H18
         (101 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       41   2e-04
SB_47213| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_4982| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)                  26   4.2  
SB_48496| Best HMM Match : ResIII (HMM E-Value=0.96)                   26   5.6  
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               25   9.8  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       25   9.8  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 18  MTNSKGYRRGTRDLFARRFRTHGTIH 95
           MTN+KGYRRGTR +F+++FR  G  H
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEH 448


>SB_47213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 72 IFGRTSPWYHDDNPWSLSYFS 10
          +  R SPW+  ++P+S SY++
Sbjct: 18 VLERASPWWSSNSPYSESYYN 38


>SB_4982| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
          Length = 217

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 66  GRTSPWYHDDNPWSLSYFS 10
           G   PW   D PW L+YF+
Sbjct: 165 GCIEPWPKSDFPWHLAYFA 183


>SB_48496| Best HMM Match : ResIII (HMM E-Value=0.96)
          Length = 343

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 78  CGIFGRTSPWYHDDNPWSLSYFSL 7
           CG +G+  PW   + P ++ Y  L
Sbjct: 111 CGDYGQVPPWRDKEGPHAVQYMRL 134


>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 524

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 87  FHVCGIFGRTSPWYHDDNPWSL 22
           F+  GI G++ PW HD   + L
Sbjct: 319 FYRSGIMGKSLPWKHDKMTFKL 340


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 84   HVCGIFGRTSPWYHDDNPWSLSY 16
            HV G+   +  WY DDNP S ++
Sbjct: 4004 HVSGVPLPSIQWYKDDNPISSNH 4026


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,908
Number of Sequences: 59808
Number of extensions: 39272
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 16,821,457
effective HSP length: 14
effective length of database: 15,984,145
effective search space used: 303698755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)