Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H18
         (101 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    43   3e-05
U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical p...    26   3.1  
U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical p...    26   3.1  
AF016684-4|AAB66208.1|  159|Caenorhabditis elegans Hypothetical ...    25   9.5  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal
          protein, large subunitprotein 21 protein.
          Length = 161

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTIH 95
          MTNSKG RRGTR +FAR FR HG  H
Sbjct: 1  MTNSKGLRRGTRYMFARDFRKHGVEH 26


>U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical
           protein B0280.1b protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 92  DSSMCAESSGEQVPGTTTITLGVCHIL 12
           D S C + SGE     T  +L  CH+L
Sbjct: 136 DGSFCGDLSGEVDTRFTLCSLATCHLL 162


>U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical
           protein B0280.1a protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 92  DSSMCAESSGEQVPGTTTITLGVCHIL 12
           D S C + SGE     T  +L  CH+L
Sbjct: 136 DGSFCGDLSGEVDTRFTLCSLATCHLL 162


>AF016684-4|AAB66208.1|  159|Caenorhabditis elegans Hypothetical
           protein F45C12.9 protein.
          Length = 159

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 87  FHVCGIFGRTSPWYHDDNPWSLSYFSL 7
           F+  GI      WY    P+ +SYF++
Sbjct: 72  FNFYGIVCEDGQWYATKYPYGISYFAI 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,983
Number of Sequences: 27780
Number of extensions: 25295
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)