Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H18
         (101 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60...    27   1.3  
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi...    27   1.3  
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi...    27   1.3  
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi...    27   1.3  
At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein S...    26   2.9  
At5g26230.1 68418.m03123 expressed protein predicted protein, Ar...    25   5.1  
At1g64080.1 68414.m07259 expressed protein identical to hypothet...    25   6.8  

>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
          ribosomal protein L21 GI:3885884 from [Oryza sativa]
          Length = 164

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTI 92
          M    G R  TRDLFAR FR  G I
Sbjct: 1  MPAGHGVRARTRDLFARPFRKKGYI 25


>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E)
          similar to 60S ribosomal protein L21 GB:Q43291
          GI:2851508 from [Arabidopsis thaliana]
          Length = 164

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTI 92
          M    G R  TRDLFAR FR  G I
Sbjct: 1  MPAGHGVRARTRDLFARPFRKKGYI 25


>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C)
          Similar to ribosomal protein L21 (gb|L38826). ESTs
          gb|AA395597,gb|ATTS5197 come from this gene
          Length = 164

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTI 92
          M    G R  TRDLFAR FR  G I
Sbjct: 1  MPAGHGVRARTRDLFARPFRKKGYI 25


>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A)
          Similar to L21 family of ribosomal protein; amino acid
          sequence is identical to F21M12.8
          Length = 164

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 18 MTNSKGYRRGTRDLFARRFRTHGTI 92
          M    G R  TRDLFAR FR  G I
Sbjct: 1  MPAGHGVRARTRDLFARPFRKKGYI 25


>At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein
           Similar to gb|U04299 mannosyl-oligosaccharide
           alpha-1,2-mannosidase from Mus musculus. ESTs gb|R84145
           and gb|AA394707 come from this gene
          Length = 574

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 63  RTSPWYHDDNPWS 25
           R  PWYH+ N WS
Sbjct: 308 RHGPWYHEANMWS 320


>At5g26230.1 68418.m03123 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 341

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 98  KVDSSMCAESSGEQVPGTTTIT 33
           K +SS   + SG  + GTTT+T
Sbjct: 215 KTESSSSLKDSGNNIRGTTTVT 236


>At1g64080.1 68414.m07259 expressed protein identical to
          hypothetical protein GB:AAF24565 GI:6692100 from
          [Arabidopsis thaliana]
          Length = 411

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 89 SSMCAESSGEQVPGTTTITLGV 24
          SS+C  S+GE + GTTTI   V
Sbjct: 29 SSLCRYSAGESI-GTTTIVTSV 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,113
Number of Sequences: 28952
Number of extensions: 24658
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,070,560
effective HSP length: 15
effective length of database: 11,636,280
effective search space used: 209453040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)