Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H17
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 33 0.020
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 30 0.14
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 27 1.0
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 2.3
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 26 3.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.1
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 7.1
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 24 9.4
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 33.1 bits (72), Expect = 0.020
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 5 PYQAALAGEMSNVPLITSVTAHEGLYPAAAYQTDPVLLKELESRW 139
P +A + ++S +PL + + A+E AA Y P+LL+ ES W
Sbjct: 240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGW 284
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 30.3 bits (65), Expect = 0.14
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 77 LYPAAAYQTDPVLLKELESRWEQLAS--NIFEYNDTLPLNKRSVVAAKIKQHYLDGKAVS 250
L P+ A D +++L+ +W++ + ++EY +TL + + ++H L+GK +
Sbjct: 47 LKPSPALSKD--WIRKLQKKWDREITYKGLYEYPETLARTQ-----IRFQRHGLEGKIMG 99
Query: 251 QDTYPQLVEALSDR 292
P+L+E L+ +
Sbjct: 100 YKEVPELIEDLNSK 113
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 YPYQAALAGEMSNVPLITSVTAHEGLYPAAAYQ--TDPVLLKELESRWEQLASNIFEYND 175
YP + + NV L AH G Y +Q TD ++LKE WE ++ E +
Sbjct: 203 YPDEKETLAALDNVKLSDENAAHLG-YLVKYFQNYTDKIILKETLMDWEDKEPSLQELTE 261
Query: 176 T 178
+
Sbjct: 262 S 262
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 119 KELESRWEQLASNIFEYNDTLPLNKRSV 202
+EL+ W +L FEY+D+L NKR +
Sbjct: 804 QELDQEWSRLEKLGFEYDDSLQ-NKRII 830
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 334 SVHLSQHAYRDNEQPVTERLNKLR 263
S H Y + P TERLN LR
Sbjct: 159 STDFQNHDYEKSSDPETERLNDLR 182
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 83 PAAAYQTDPVLLKELESRWEQLASNIFEYNDTLPLNKRSVV 205
P A Y + + L S WE+LAS + + + L K+ ++
Sbjct: 3181 PIAEYLSKLERVFHLLSEWEKLASREYSLANEMDLIKKKII 3221
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 24.6 bits (51), Expect = 7.1
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 VLLKELESRWEQLASNIFEYNDTLPLNK---RSVVAAKIKQHY-LDGKAVSQDTYPQLVE 277
+LLK W + F N TLPLN R +A H L V+ TY + +
Sbjct: 575 ILLKASYKFWLRTYRVFFLNNGTLPLNHPYVRGCLATYELAHISLHTNIVALQTYAKSIV 634
Query: 278 ALSDRLF 298
+ S RL+
Sbjct: 635 STSRRLY 641
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 14 AALAGEMSNVPLITSVTAHEGLYPAAAYQTDPVLLKELESR 136
A + E+ + + H GLYP + P L K L SR
Sbjct: 101 AIITDELDTLAQSLAFLNHVGLYPIVVHGAGPQLNKILASR 141
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 62 TAHEGLYPAAAYQTDPVLLKELESRW--EQLASNIFE 166
TA++ + A AYQ + + E+ W E++ +N+ E
Sbjct: 401 TANDNVLAALAYQVSECTITKEETNWPLEEIEANVQE 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,176
Number of Sequences: 5004
Number of extensions: 35499
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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