Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H17
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 33 0.14
02_05_0628 - 30466535-30468001 31 0.43
12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323... 28 3.0
05_06_0225 - 26555217-26555280,26555647-26555713,26555800-265558... 28 3.0
06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024... 27 5.3
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 27 5.3
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 27 7.0
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 32.7 bits (71), Expect = 0.14
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Frame = +2
Query: 158 IFEYNDT-LPLNKRSV-----VAAKIKQHYLDGKAVSQDTYPQLVEAL----SDRLFVVP 307
+F+ +D +P++K V VA+K ++YLDGK VS+ L+E+ S+ +VV
Sbjct: 81 VFDNSDNRIPVDKEEVRLRRTVASKKDEYYLDGKHVSKTEVMNLLESAGFSRSNPYYVVQ 140
Query: 308 VGMLAQMHAIKSGQ 349
G +A + +K +
Sbjct: 141 QGKIASLTLMKDSE 154
>02_05_0628 - 30466535-30468001
Length = 488
Score = 31.1 bits (67), Expect = 0.43
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 218 KQHYLDGKAVSQDTYPQLVEALS--DRLFVVPVGMLAQMHA--IKSGQPTYVYRYSYRAT 385
++H+LDG+A+ + P LV AL+ RL Q+HA +KSG P V A+
Sbjct: 48 RRHHLDGRALHAN--PALVPALAACARLLPSAAAEAEQIHALLVKSGDPPSV--SGVYAS 103
Query: 386 TSLSNLMAR 412
TSL + AR
Sbjct: 104 TSLVRVYAR 112
>12_01_0410 -
3234836-3234958,3235636-3235776,3235899-3235949,
3236045-3236125,3236427-3236483,3236898-3236993,
3237204-3237379,3237630-3237703,3237909-3238016,
3238100-3238236,3238396-3238446,3239032-3239142,
3239291-3239363,3240322-3240398,3240641-3240706,
3241349-3241463,3242255-3242511
Length = 597
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 44 PLITSVTAHEGLYPAAAYQTDPVLLKELESRWEQLASNIFEYNDTL 181
PL +V +GL P P LL + WE + SN ++D L
Sbjct: 501 PLQAAVGVRQGLRPGLPENAHPQLLDLMRRCWEGIPSNRPPFSDIL 546
>05_06_0225 -
26555217-26555280,26555647-26555713,26555800-26555871,
26557058-26557109,26557250-26557302,26557476-26557535,
26557718-26558075
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 367 PVNVSRLSRFDSVHLSQHAYRDNEQPVTERLNKLRVCVLTNSF 239
PV+ L FD VHL + RDN + ++K V L F
Sbjct: 70 PVSAVALLEFDPVHLIRRPPRDNSPSLNRAMSKQLVSRLLGMF 112
>06_03_1458 +
30301585-30301775,30302131-30302245,30302345-30302430,
30302552-30302662,30303154-30303208,30303327-30303437,
30304347-30304403,30304847-30305016,30305103-30305210,
30305643-30305716,30305757-30305779,30306188-30306283,
30306502-30306582,30306934-30307068,30307162-30307227,
30307283-30307297
Length = 497
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 71 EGLYPAAAYQTDPVLLKELESRWEQLASN 157
+GL P TDP L LES W+Q A N
Sbjct: 426 KGLRPVIPKATDPKLALLLESCWQQNAVN 454
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 278 ALSDRLFVVPVGMLAQMHAIKSGQ 349
AL LF VPV +L++ HA+ SG+
Sbjct: 769 ALVGELFTVPVTILSKGHAVHSGE 792
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 194 RSVVAAKIKQHYLDGKAVSQDTYPQLVE 277
R VA+K ++YLDGK +S+ L+E
Sbjct: 19 RRTVASKKDEYYLDGKHISKTEVMNLLE 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,147,465
Number of Sequences: 37544
Number of extensions: 234628
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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