Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H17
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z82278-7|CAJ43451.1|  416|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z68301-9|CAA92628.1|  456|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z68299-8|CAA92615.1|  456|Caenorhabditis elegans Hypothetical pr...    27   8.3  
M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 26  GEMSNVPLITSVTAHEGLYPAAAYQTD-PVLLKELESRWEQLASNIFEYNDTLPLNKRSV 202
           GE+S   L++  +   G  P     T  P LLK L+  W+ +  N F     L +  R  
Sbjct: 45  GELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQI-ARQE 103

Query: 203 VAAKIKQHYLDGKAVSQ 253
           ++  + QH    + +S+
Sbjct: 104 LSHSLYQHDAACRVISR 120


>AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical
           protein Y67A10A.1 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 358 VSRLSRFDSVHLSQHAYRDNEQPVTERLNKLRVCVLTNSFTIKVMLL 218
           V+R    D++HLS+    D ++PV +R  +++ C   + F +  M L
Sbjct: 553 VTRPDDMDALHLSKKLADDEKRPVVKRFRQIK-CKKCHFFDLSPMFL 598


>Z82278-7|CAJ43451.1|  416|Caenorhabditis elegans Hypothetical
           protein M162.11 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = -2

Query: 370 IPVNVSRLSRF-----DSVHLSQHAYRDNEQPVTERLN 272
           +P  VS +SRF     + +H+S++   +N +PV E +N
Sbjct: 271 MPAIVSMVSRFKPGKVERIHISRYKIEENREPVDELVN 308


>AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical
           protein C41D11.3 protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 199 GCSCENKATLP*W*SC*SGHIPATC*GAQ*PAVRCPC 309
           GCSCEN   LP    C    I     G + P   C C
Sbjct: 299 GCSCENGVCLPETCQCAIDGIHCQVDGGEWPTQPCAC 335


>Z68301-9|CAA92628.1|  456|Caenorhabditis elegans Hypothetical
           protein T04B2.5 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 340 IWTADLRLPVFVSRNYEFIKPYG 408
           I TA  RL VF  RNY F KP+G
Sbjct: 244 ISTAPARLHVF--RNYSFTKPFG 264


>Z68299-8|CAA92615.1|  456|Caenorhabditis elegans Hypothetical
           protein T04B2.5 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 340 IWTADLRLPVFVSRNYEFIKPYG 408
           I TA  RL VF  RNY F KP+G
Sbjct: 244 ISTAPARLHVF--RNYSFTKPFG 264


>M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical
           protein B0303.4 protein.
          Length = 616

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 412 SGHKV**TRSCAIRIPVNVSRLSRFDSVHLSQHAYRDNEQPVTERLNKLRV 260
           +GH    TR         ++ L+R D   L    YR   +P TER    RV
Sbjct: 135 AGHVPDATRDSQYAAAAAIAILARGDDASLMSRTYRPQLRPPTERSGNTRV 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,264
Number of Sequences: 27780
Number of extensions: 203620
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)