Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H17
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00525.1 68417.m00072 expressed protein                             31   0.48 
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    28   2.5  
At3g03730.1 68416.m00378 F-box family protein contains F-box dom...    27   5.9  
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i...    27   5.9  
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i...    27   5.9  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    27   7.7  
At2g36990.1 68415.m04537 RNA polymerase sigma subunit SigF (sigF...    27   7.7  

>At4g00525.1 68417.m00072 expressed protein
          Length = 140

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 116 LKELESRWEQLASNIFEYNDTLPLNKRSVVAAKIKQH 226
           L++LES  +Q+A  I EY  TLP + R+ + + +  H
Sbjct: 17  LEKLESDVKQMAKKISEYRQTLPDHLRNTLDSALSSH 53


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +2

Query: 125 LESRWEQLASNIFEYNDTLPLNKRSVVAAKIKQHYLDGKAVSQDTYPQLVEALSDR 292
           L+ + +++ +++F++N      KR + +   K   L  ++V+ D YP+L+E+  D+
Sbjct: 612 LQMKIQEVNNSLFKHNKDTESRKRYIES---KLQALKQESVTIDAYPKLLESAKDK 664


>At3g03730.1 68416.m00378 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 393

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +2

Query: 266 QLVEALSDRLFVVPVGMLAQMHAIKSGQPTYVYRYSYRATTSLSNLMARNDDDYGVC 436
           +L++++ D   ++ +G+     A K G       +S+        +   NDD YG+C
Sbjct: 303 RLIKSIGDEALILDLGITV---AAKDGVMRNCIYFSHHELLRYKGVSLCNDDKYGIC 356


>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 176 CRCTRRCYLRVVPIGTRVP 120
           C+C   CYLRV   G ++P
Sbjct: 599 CKCPSSCYLRVTQHGIKLP 617


>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 176 CRCTRRCYLRVVPIGTRVP 120
           C+C   CYLRV   G ++P
Sbjct: 599 CKCPSSCYLRVTQHGIKLP 617


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 33   CRMFHSLLPSLHMKVFIQL 89
            CR+FHS  P L M + IQ+
Sbjct: 1209 CRVFHSRYPELQMSIKIQV 1227


>At2g36990.1 68415.m04537 RNA polymerase sigma subunit SigF (sigF) /
           sigma-like factor (SIG6) identical to RNA polymerase
           sigma subunit SigF [Arabidopsis thaliana] GI:7209640;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2;
           identical to cDNA partial mRNA for putative sigma-like
           transcription factor (sig6 gene) GI:6273429
          Length = 547

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 313 HAGSNARYQIWTADLRLPVFVSRNYE 390
           H G ++R ++ TA+LRL V +++ Y+
Sbjct: 302 HRGRSSREKLITANLRLVVHIAKQYQ 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,672,918
Number of Sequences: 28952
Number of extensions: 185700
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)