Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H16
         (363 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   5.1  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    20   6.8  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    20   6.8  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 144 HGGSCCTHEASLGTATCEIS-TFIWFKVYICDPPVG 40
           HGGSC      +  +TC++  T+  F    CD   G
Sbjct: 112 HGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFG 147


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 144 HGGSCCTHEASLGTATCEIS-TFIWFKVYICDPPVG 40
           HGGSC      +  +TC++  T+  F    CD   G
Sbjct: 112 HGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFG 147


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 144 HGGSCCTHEASLGTATCEIS-TFIWFKVYICDPPVG 40
           HGGSC      +  +TC++  T+  F    CD   G
Sbjct: 112 HGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFG 147


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 288 LQTDCRHIKSGRLTQVLGQRLPPAQPPAT 202
           L T  RH++   L  +   + PP +P  T
Sbjct: 531 LSTINRHLRGNELLPMQQSQNPPTKPYGT 559


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 289 TPDRLPPHQVWPAYSGPW 236
           TP   P +   P+Y  PW
Sbjct: 20  TPPHNPAYSPPPSYCDPW 37


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 68  RSIFATHQLED 36
           RSIFA  QLED
Sbjct: 422 RSIFAGKQLED 432


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 68  RSIFATHQLED 36
           RSIFA  QLED
Sbjct: 90  RSIFAGKQLED 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,482
Number of Sequences: 336
Number of extensions: 1839
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)