Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H16
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    28   0.51 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   2.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   2.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   4.8  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   6.3  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    24   8.3  

>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -1

Query: 357 APVKASNPPGAKYLAANVAAIVELQTDCRHIKSGRLTQVLGQRLPPAQPP 208
           AP  ++NP G K+  ++   ++ L+   +  ++G+L ++ G+ L     P
Sbjct: 159 APEDSNNPLGYKFSWSSRGVLLALRNSAKFYENGKLVEIDGKDLMETAKP 208


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 196 YSRRWWLGRRQTLPKDLSKPARLD 267
           Y RRW LG +    K L K  +LD
Sbjct: 351 YPRRWGLGPQSMKKKTLKKEGKLD 374


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 202 ANNSIHFLDLAKRYLVSLT 146
           ANN + FL  + RYLV+LT
Sbjct: 510 ANNKLFFLPHSTRYLVNLT 528


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 289 TPDRLPPHQVWPAYSGPWAAFAA 221
           TP R+PPH V P    P++ F A
Sbjct: 120 TPSRMPPHYVQP--HPPFSVFPA 140


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 23  LITLNLPTGGSQI*TLNQMKVLISHVAVPKDASWVQQEPP 142
           LI +N P+G +    LN++K +IS+  +   A + +  PP
Sbjct: 52  LIAINKPSGRTSAQCLNELKKIISNSEL---AQYFRPAPP 88


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 102 ATCEISTFIWFKVYICDP 49
           A   I TF  +K+Y CDP
Sbjct: 13  ALLSIGTFDGYKIYNCDP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,141
Number of Sequences: 5004
Number of extensions: 29886
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)