Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H16
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0664 + 18501248-18502802,18503370-18505054 30 0.64
09_04_0350 + 16899076-16900164 29 1.1
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 1.5
09_03_0203 + 13475118-13475447,13475529-13475660,13475924-134761... 27 3.4
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 27 3.4
06_01_0015 + 181155-181323,182074-182195,182425-182449,182664-18... 27 4.5
05_04_0300 - 19969066-19969535,19971216-19972686 27 4.5
03_03_0278 - 16126803-16129049 27 6.0
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 26 7.9
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 26 7.9
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 29.9 bits (64), Expect = 0.64
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -1
Query: 147 LHGGSCCTHEASLGTATCEISTFIWFKVYICD----PPV 43
LH GSC T+E L + C +++ +Y CD PPV
Sbjct: 829 LHVGSCGTYETCLVNSLCGLTSLTTLMLYGCDIAALPPV 867
>09_04_0350 + 16899076-16900164
Length = 362
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 227 KRCPRT*VSRPDLMWRQSVWSSTIA 301
+RCP+ SRPDL + WS T+A
Sbjct: 192 RRCPQIRASRPDLEGSRLWWSETLA 216
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 316 GS*CGCDCRTPDRLPPHQVWPAYSGPWAAFAAGPTTSDANNS 191
G G D + ++PP Q P+Y GP +AA P++ NN+
Sbjct: 290 GDESGYDAGSYGQVPP-QGPPSYGGPGGDYAAPPSSYGGNNA 330
>09_03_0203 +
13475118-13475447,13475529-13475660,13475924-13476119,
13476281-13476385,13476726-13476803,13477269-13477346,
13477655-13477983
Length = 415
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -3
Query: 286 PDRLPPHQVWP---AYSGPWAAFAAGPTTS 206
P+R+PPH P + G +AAF AGPT S
Sbjct: 257 PERVPPHSSAPITSQWQGGFAAF-AGPTQS 285
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 160 SNALQGPES-ECCYSRRWWLGRRQTL-PKDLSKPARLDVAAIGLEFDN 297
S++ + PES + C++R WW +L P+ + K R+ + G+E N
Sbjct: 190 SSSTKTPESMKPCFAREWWFDDMTSLCPQTIEKAMRV-LGCYGIENKN 236
>06_01_0015 +
181155-181323,182074-182195,182425-182449,182664-182828,
183203-183321
Length = 199
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 77 MKVLISHVAVPKDASWVQQEPPCSQR 154
MKV+ +A A+W QEPP SQ+
Sbjct: 122 MKVIEEQLAASAAAAWNTQEPPPSQQ 147
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 292 RTPDRLPPHQVWPAYSGPWAAFAAGPTTSDANNSI 188
R+P+R + A SGP A+ ++ PTTS +N+++
Sbjct: 62 RSPERDDSGEGSAAGSGPTASPSSSPTTSASNSAV 96
>03_03_0278 - 16126803-16129049
Length = 748
Score = 26.6 bits (56), Expect = 6.0
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Frame = -1
Query: 348 KASNPPGAKY----LAANVAAIVELQTDCRHIKSGRLTQVLGQRLPPAQPPATRITA--- 190
KAS PGA AAN AA T K+G T + QR PP PP + A
Sbjct: 144 KASAAPGASNGFYNFAANAAA--SKVTRGNKQKAGPATSSVRQRPPPPPPPPRQAPAPPP 201
Query: 189 ---FTFWT 175
TFWT
Sbjct: 202 AKPPTFWT 209
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 211 WLGRRQTLPKDLSKPARLDVAAIGLEFDNRSHISCQ 318
W+ +PK+LS GLE + H+SC+
Sbjct: 1588 WVKTSLFVPKNLSPTVSSPKTTTGLELPSGGHVSCR 1623
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 26.2 bits (55), Expect = 7.9
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +1
Query: 13 SACVNHFKS-SNWWVANIDLKPNESA-DFTRCRA*RCLVGTTGATM*STTLSNALQGPE- 183
S C+ +++ +NWW++ + K +ES+ L+ TT LS ++G +
Sbjct: 81 SVCICYYEQDNNWWISKVVRKKHESSVTSVAWHPNNILLATTSTDGKCRVLSTFIKGVDT 140
Query: 184 --SECCYSRRWWLGRRQTLPKDLS 249
S S W G Q DLS
Sbjct: 141 RGSHASTSTDWKFG-EQIAQLDLS 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,783
Number of Sequences: 37544
Number of extensions: 261961
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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