Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H16
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                   49   1e-06
SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)           27   4.6  
SB_25070| Best HMM Match : RVT_1 (HMM E-Value=1.4e-15)                 27   4.6  
SB_52772| Best HMM Match : rve (HMM E-Value=0.001)                     27   6.0  
SB_49514| Best HMM Match : Ion_trans_2 (HMM E-Value=0.0026)            27   6.0  
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   6.0  
SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)        26   8.0  

>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   GALGSACVNHFKSSNWWVANIDLKPNESA 87
           GALG+ CV++FK+  WWVA++DL PNE A
Sbjct: 103 GALGATCVSYFKAREWWVASVDLFPNEEA 131



 Score = 33.1 bits (72), Expect = 0.069
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +2

Query: 92  SHVAVPKDASWVQQEPPCSQRH*VTLCKVQKVNAVIRVAGGWAGG 226
           ++V V    SW +Q     Q+    L    K+NA+I VAGGWAGG
Sbjct: 133 ANVIVDPAKSWDEQNNEV-QKKVDELLDGNKLNAIICVAGGWAGG 176


>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
          Length = 411

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 157 LSNALQGPESECCYSRRWWLGRRQ 228
           LS+A+   ++ C + R WW G R+
Sbjct: 318 LSSAMSAAKAICDHMRDWWFGTRE 341


>SB_25070| Best HMM Match : RVT_1 (HMM E-Value=1.4e-15)
          Length = 385

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 199 SRRWWLGRRQTLPKDLSKPARLDVAAIGLEFDN 297
           S R W  ++ T+   ++   + D+ AIGL+ DN
Sbjct: 272 SSRVWENKKLTISTKITDSCKRDMLAIGLDVDN 304


>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 646

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -1

Query: 330 GAKYLA--ANVAAIVELQTDCRHI---KSGRLTQVLGQRLPPAQPPATR 199
           GA ++A   N A      T C+H    +  R    L +R+   +PPATR
Sbjct: 44  GALHIARHVNTAGTASADTRCQHEHHQEPARTPSALAERIRSPEPPATR 92


>SB_49514| Best HMM Match : Ion_trans_2 (HMM E-Value=0.0026)
          Length = 471

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 200 RVAGGWAGGKRCPRT*VSR 256
           R  GGW  G RCP+T + R
Sbjct: 166 RERGGWGYGDRCPQTVLGR 184


>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1054

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 169 LQGPESECCYSRR 207
           L+GP   CCYSRR
Sbjct: 957 LRGPNKACCYSRR 969


>SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)
          Length = 573

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 175 GPESECCYSRRWWLGRRQTLPKDLSKPA-RLDVAAIG 282
           G E  C   R W  G    + +D+S+ A  LDV+ +G
Sbjct: 199 GAEWSCSADRAWLQGNIDLVRRDISRCAGELDVSGVG 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,972,981
Number of Sequences: 59808
Number of extensions: 259120
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)