Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H16
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...    57   4e-09
U97017-8|AAB52356.1|  363|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U97017-5|AAB52361.2|  312|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AF039717-4|AAO21385.1|  303|Caenorhabditis elegans Abnormal daue...    27   4.0  
AF039717-3|AAK82917.1|  530|Caenorhabditis elegans Abnormal daue...    27   4.0  
AF039717-2|AAK82918.1|  508|Caenorhabditis elegans Abnormal daue...    27   4.0  
AF039717-1|AAK82919.1|  510|Caenorhabditis elegans Abnormal daue...    27   4.0  
AF032112-1|AAC47803.1|  510|Caenorhabditis elegans DAF-16 protein.     27   4.0  
AF020344-1|AAB84392.1|  530|Caenorhabditis elegans fork head-rel...    27   4.0  
AF020343-1|AAB84391.1|  508|Caenorhabditis elegans fork head-rel...    27   4.0  
AF020342-1|AAB84390.1|  510|Caenorhabditis elegans fork head-rel...    27   4.0  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    26   9.3  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    26   9.3  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = +2

Query: 92  SHVAVPKDASWVQQEPPCSQRH*VTLCKVQKVNAVIRVAGGWAGGKRCPRT*VSRPDLMW 271
           S++ V  + +W +QE    ++   +L +  +V+ V  VAGGWAGG    +  V   DLM 
Sbjct: 43  SNILVDGNKNWTEQEQSILEQTASSL-QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMI 101

Query: 272 RQSVWSSTIAATLAAKY 322
           +QSVWSS IAA LA  +
Sbjct: 102 KQSVWSSAIAAKLATTH 118



 Score = 35.9 bits (79), Expect = 0.009
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +1

Query: 1   GALGSACVNHFKSSNWWVANIDLKPNESAD 90
           GALGSA +  FK + + V NIDL  N+ AD
Sbjct: 13  GALGSAILEFFKKNGYTVLNIDLSANDQAD 42


>U97017-8|AAB52356.1|  363|Caenorhabditis elegans Hypothetical
           protein F47B3.1 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -3

Query: 301 CDCRTPDRLPPHQVWPAYSGPWAAFAAGPTTSDANN 194
           C+C    ++  HQ WP   G    F   P T    N
Sbjct: 166 CNCIETGKIKCHQYWPLEQGQKLVFGEAPNTISVAN 201


>U97017-5|AAB52361.2|  312|Caenorhabditis elegans Hypothetical
           protein F47B3.6 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -3

Query: 301 CDCRTPDRLPPHQVWPAYSGPWAAFAAGPTTSDANN 194
           C+C    ++  HQ WP   G    F   P T    N
Sbjct: 115 CNCIETGKIKCHQYWPLEQGQKLVFGEAPNTISVAN 150


>AF039717-4|AAO21385.1|  303|Caenorhabditis elegans Abnormal dauer
           formation protein16, isoform e protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 11  SSWWVINPDAKPGRNPRRTRERS 33


>AF039717-3|AAK82917.1|  530|Caenorhabditis elegans Abnormal dauer
           formation protein16, isoform a protein.
          Length = 530

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 238 SSWWVINPDAKPGRNPRRTRERS 260


>AF039717-2|AAK82918.1|  508|Caenorhabditis elegans Abnormal dauer
           formation protein16, isoform b protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 216 SSWWVINPDAKPGRNPRRTRERS 238


>AF039717-1|AAK82919.1|  510|Caenorhabditis elegans Abnormal dauer
           formation protein16, isoform c protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 218 SSWWVINPDAKPGRNPRRTRERS 240


>AF032112-1|AAC47803.1|  510|Caenorhabditis elegans DAF-16 protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 218 SSWWVINPDAKPGRNPRRTRERS 240


>AF020344-1|AAB84392.1|  530|Caenorhabditis elegans fork
           head-related transcriptionfactor DAF-16b protein.
          Length = 530

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 238 SSWWVINPDAKPGRNPRRTRERS 260


>AF020343-1|AAB84391.1|  508|Caenorhabditis elegans fork
           head-related transcriptionfactor DAF-16a2 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 216 SSWWVINPDAKPGRNPRRTRERS 238


>AF020342-1|AAB84390.1|  510|Caenorhabditis elegans fork
           head-related transcriptionfactor DAF-16a1 protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  SNWWVANIDLKPNESADFTRCRA 108
           S+WWV N D KP  +   TR R+
Sbjct: 218 SSWWVINPDAKPGRNPRRTRERS 240


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 297 IVELQTDCRHIKSGRLTQVLGQR-LPPAQPPATRITAFTF 181
           +V + T CR I   R+     ++ L P  PP  ++TAFT+
Sbjct: 267 LVMIDTTCRVIHRERIPIADKEKTLIPNPPPTQKLTAFTW 306


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 337 STRRQVFGS*CGCDCRTPDRLPPHQVWPAY 248
           S R Q+  S  G   +TP  + P Q+WP++
Sbjct: 265 SPRLQMMLSTYGITTQTPHEVEPVQIWPSW 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,045
Number of Sequences: 27780
Number of extensions: 184119
Number of successful extensions: 409
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)