Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H16
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein...    28   2.1  
At1g52930.1 68414.m05985 brix domain-containing protein contains...    27   3.7  
At5g04320.1 68418.m00424 expressed protein                             26   6.5  
At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family...    26   8.6  
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea...    26   8.6  
At1g16120.1 68414.m01932 wall-associated kinase, putative contai...    26   8.6  
At1g06320.1 68414.m00668 hypothetical protein                          26   8.6  

>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 474

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 286 PDRLPPHQVWPAYSGPWAAFAAGPTTS 206
           PDR   H   P+YS PW ++   P T+
Sbjct: 57  PDRYSSHATPPSYSKPWISWNPIPKTN 83


>At1g52930.1 68414.m05985 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 320

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 351 VKASNPPGAKYLAANVAAIVELQTDCRHIKSGR 253
           VK+ N P  K+L   V A+ E++    H+K  R
Sbjct: 129 VKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSR 161


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 194 QHSLSGPCK-ALLSVVDYMVAPVVPTRHL*ARQRVKSALSFGLRSIFATHQLE 39
           QH L   CK ALL V  ++   V+P  H  ++ +V ++ S G    F  H ++
Sbjct: 60  QHELG--CKNALLKVKKHLEEQVLPRTHHESKDKVSASASDGDCKSFQVHDIK 110


>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; similar to root nodule extensin
           [Pisum sativum] gi|15021750|gb|AAK77902; Common family
           members: At5g19800, At5g57070, At1g72790 [Arabidopsis
           thaliana]
          Length = 102

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -3

Query: 292 RTPDRLPPHQVWPAYSGPWAAFAAGPTTSDANNSIHFLDLAKRYLVSLTTWWLLL 128
           R+P  LPP    PAYS P A     P    + ++  F         S   WW LL
Sbjct: 48  RSPVTLPPPPPHPAYSRPVALPPTLPIPHPSPHAERFYYRQSPPPPSGKPWWWLL 102


>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +1

Query: 13  SACVNHFKS-SNWWVANIDLKPNESA-DFTRCRA*RCLVGTTGATM*STTLSNALQGPES 186
           + C+ +++  +NWWV+ +  K +ES+           L+ TT         S  ++G ++
Sbjct: 122 TVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDT 181

Query: 187 ECCY--SRRWWLGRRQTLPKDLS 249
           +  +  +  ++L ++Q L  DLS
Sbjct: 182 KYAHYLNGAFFLLKQQILQLDLS 204


>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 730

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 250 YSGPWAAFAAGPTTSDANNSIHFLDLAKRYLVSLT 146
           Y   W       TTSD+N ++  L +  R +V+++
Sbjct: 60  YLNGWYEVICNTTTSDSNTTVPLLSMINREVVNIS 94


>At1g06320.1 68414.m00668 hypothetical protein
          Length = 180

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 187 ECCYSRRWWLGRRQTLPKDLSKP 255
           ECC++    +  ++T P ++SKP
Sbjct: 82  ECCFTSLQIINSQETTPSEISKP 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,595
Number of Sequences: 28952
Number of extensions: 176776
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)