Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H12
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 1.8
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 3.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.1
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 5.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.2
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 9.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.5
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 103 SPLHASSPGLPPAH 62
SPLHA+S LPP+H
Sbjct: 43 SPLHANSVSLPPSH 56
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 139 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 26
+ P++Y+R +S + A P PP + +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 273 CSHYFRLLLYFLSMVCTRKRSY 208
CS LL+ FL+MVC+ K Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 231 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 136
V TR+R + R C +CR ++ ++P + C
Sbjct: 20 VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -2
Query: 254 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 105
+YC + W +N Y G + A +F+S+ S Y+ + + S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 153 GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 254
G+VS YC + PG + V+ IP+ S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 169 P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 26
P + + + ++P S + PP S A++P LPP+ S + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.2
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = -3
Query: 208 YTPGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSA 35
Y P VP P P++T LP R PP S P PP S +L +SA
Sbjct: 1033 YEPPTVSVPS---PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPV-STALPSSSA 1086
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 155 ICQLRTEILRHKEHPRRIYERLRVHTMDKKYN 250
IC L + H HP IY R+ + K YN
Sbjct: 78 ICSLFLSLKYHHLHPEYIYS--RISKLGKSYN 107
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 528 SDASLYVSLRSLGVPLNLPPVCA 460
+D +YVSLR PL PV A
Sbjct: 1014 TDTGVYVSLRKANSPLQFKPVRA 1036
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,376
Number of Sequences: 5004
Number of extensions: 43373
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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