Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H11
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 0.94
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84) 28 5.0
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42) 28 5.0
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3) 27 6.6
SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042) 27 6.6
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_19901| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_21554| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 59 SINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVS 166
S+NS + + ++ RC +S D L+TYW+KV+
Sbjct: 229 SLNSCVSCISQASRADRCLPVSRSDSILETYWRKVN 264
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 30.3 bits (65), Expect = 0.94
Identities = 29/102 (28%), Positives = 48/102 (47%)
Frame = -3
Query: 374 TLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLS 195
T+ AYL+ + + GK + +LTG +T GKP +L GKP L ++
Sbjct: 55 TIEASAYLSVRGIVRLPGKPV-ILTGEQVT--LTGKPV-------TLTGKPVTLTGKPVT 104
Query: 194 MLLKPVPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLPVS 69
+ KPV ++ KP S + L ++ +L T+ PV+
Sbjct: 105 LAGKPVTLMGKPVSLTGKLVTLTGKLVTLTGKLVTLTVKPVT 146
>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -2
Query: 480 LSVYLHVGKLHVVCEESRHINFPIEGES*GHCVETYTPPTSVSRLHSRHI 331
++ YL++ ++ + ++ RHI + G++ G V + SV R H + I
Sbjct: 105 VAAYLNIPEIIRIAKKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVI 154
>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
Length = 649
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 155 KKVSTQLEQVSRASRVGGIRVALAFRTGFCY 247
KK+ST+ + RAS V +++ F TG CY
Sbjct: 613 KKMSTRSMGLKRASSVKYVQLLYLFNTGKCY 643
>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
Length = 1172
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 20 MTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASR 199
+TN + +KS+ + I T + T+ RSR +S + Y+K + L +S S
Sbjct: 283 LTNQIRRNKSVTNQIRRTNEKVTNQIKRSR-LPISLGVTSKQPYYKGNARSLIYISGTSL 341
Query: 200 VGGIRVALAFRTGFCYLSE 256
V + V C+L +
Sbjct: 342 VPPLTVRTETPNTLCFLQQ 360
>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
Length = 110
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 272 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 144
GKPPR P+ SL + H + + KP+P+ + N F
Sbjct: 65 GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 107
>SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042)
Length = 445
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 17 SMTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWK-KVSTQLE 178
S+ + + C +S+ ++ + L + R +C AL +D YW+ KV ++
Sbjct: 27 SLLDLVGCVRSLETASRAVLCHQAVISKRQKCLALFGKDSQQFCYWRNKVQVHIK 81
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 272 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 144
GKPPR P+ SL + H + + KP+P+ + N F
Sbjct: 800 GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 842
>SB_19901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 44 KSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASRVGGIRVAL 223
K + + L+ + +R + R+R L +K + + SR R G+RV L
Sbjct: 132 KKLLKELPEKLIGVLQPSTAARVAEIFKRERALPGGTRKDEKETAKNSRGVRERGVRVEL 191
Query: 224 AFR 232
F+
Sbjct: 192 RFK 194
>SB_21554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 198 LDALETCSSCVETFFQYVFSPRSLFDNAVHLERAADDVVL 79
LD ++ C++ VFSP +A+H RA D ++
Sbjct: 4 LDWTDSLEQCIDNSIIKVFSPEICKKSAIHAARAEPDELM 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,763
Number of Sequences: 59808
Number of extensions: 332369
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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