Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H10
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    31   0.11 
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   2.3  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.3  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   5.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.3  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   5.3  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.0  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   7.0  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   9.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   9.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   9.2  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = -1

Query: 502  RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 323
            R QED + G   N+     G  E +  E ++          L  F G+ + +S +   I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168

Query: 322  KECD*FLNDNIIDFNADEMKFLLRIRLQV 236
             EC   L  N+ D   +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 176 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 325
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 250 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 113
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 74  YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 178
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 457 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 314
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 302 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VKSDIATD 475
           E++V    + QF+A +    T+K + +  P   K R+ RL    F   +D +  D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 183  HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 317
            +S S I   W T  HSS+  +L   R +  S +  ++  LRN  H
Sbjct: 973  NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 108 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 224
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 368 KEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVVKIFLGPKYNDYGFPI 529
           + I+ SYP+ F  R P+  H P +  +D  +  A + V    L P+ N    P+
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLLDASA--ALNPVQNPLLMPQQNHEHSPL 657


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 95  VLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNR 205
           V G  P PF   T   S+   Y   LRD    QL N+
Sbjct: 180 VNGDVPSPFGASTASSSSRRVYSVDLRDSGDVQLPNQ 216


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 449 DVKSDIATDAVVKIFLGPKYN 511
           D ++D+ T+ V K+FL  +YN
Sbjct: 806 DTENDLVTELVEKLFLFKQYN 826


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +2

Query: 194 LYNRIVGYINAFKHYLKP----YPQEKLHFVGVKINDVVVEKL 310
           +Y +++G +N F+  ++     Y   +   + VKI+ +VV+KL
Sbjct: 385 VYYKLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKL 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,465
Number of Sequences: 5004
Number of extensions: 42374
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)