Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H09
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.9  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.9  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   9.1  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 153 LKQYSQLLALISYANNLIAICKNINEDYTKTNQVNKERYKIKLYAKP 13
           LK  + L  L+S A + I   KNIN +   T ++ K+ +K +L  KP
Sbjct: 120 LKFQNMLTLLMSRAFHSIQDEKNINIELLDTPKLEKDLHKSELQQKP 166


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 431  FIQKHLDYYIIIFWSVNSFCYYVKFLYCLSIN 336
            FI K LDYY ++   +    ++    +C S+N
Sbjct: 1811 FIDKSLDYYSLMLGVLRIGAFFFPLEHCSSLN 1842


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 447 SKSNKFYTKAFRLLYNYILVSQQFLLLCQVSILSFN*PLF 328
           S+ N F+ K   +L NY+ +  +  ++C    L  + PLF
Sbjct: 25  SRKNMFFLKNIIVLSNYLYLLYKAWIVCTTISLCCDFPLF 64


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 554 NDFIQNYVYTRCSSGPLNNNNLHILE-VKLQNHNF*HQKAINFIQKHLDY 408
           +D   NY +    +G L  N+LH L+ ++  N +F  ++   FI+ + DY
Sbjct: 411 DDVFHNYFHNSNENGDLITNSLHGLDFLENANESF-PEQMYPFIKHNKDY 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,436
Number of Sequences: 5004
Number of extensions: 42787
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)