Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H09
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0138 + 11710595-11711271,11711533-11711665,11711819-117119...    28   5.4  
04_01_0239 - 3126367-3127230,3127342-3128247                           27   9.4  

>04_03_0138 +
           11710595-11711271,11711533-11711665,11711819-11711926,
           11712307-11712354,11713191-11713250
          Length = 341

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 572 PRSKDNNDFIQNYVYTRCSSGPLNNNNLHILEVKLQNH 459
           P +++NN F Q  +    +   L NN +   E++ Q H
Sbjct: 41  PEAEENNQFYQQTMNENLNMNQLGNNGIETAELEPQEH 78


>04_01_0239 - 3126367-3127230,3127342-3128247
          Length = 589

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 541 WIKSLLSFERGYHIMKCYMRHKIY--MWR 621
           W++    + RG HI +CY++ K++  +W+
Sbjct: 387 WMEYEYHYLRGIHISECYVKEKLFGCIWK 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,626
Number of Sequences: 37544
Number of extensions: 210205
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)