Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H09
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.78 
SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)                        28   7.2  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 159 LHLKQYSQLLALISYANNLIAICKNINEDYTKTN 58
           L+L    ++  L  Y N+ + +CKN++  YTK N
Sbjct: 68  LYLNSTKRIYRLYFYDNDSLWVCKNLSRSYTKEN 101


>SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)
          Length = 202

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 452 RNYGFVV*PLKCVGCCCLEDQN---YTGCKRNF 541
           R+ G+V+  LKCV C  ++D N   Y  C  NF
Sbjct: 149 RSMGYVLQDLKCVKCKGIKDSNMSRYCKCAGNF 181


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 518 SSGPLNNNNLHILEVKLQNHNF*HQKAINFIQKHL 414
           SS P  +N ++IL+   Q H+  + K+ +   KHL
Sbjct: 46  SSNPSKSNPINILDALCQKHDIAYSKSKDLDDKHL 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,379
Number of Sequences: 59808
Number of extensions: 289723
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)