Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H09
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    30   1.2  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    29   2.8  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    29   3.7  
U28971-8|AAD31046.2|  767|Caenorhabditis elegans Related to isle...    28   4.8  
AJ245560-1|CAB52188.1|  767|Caenorhabditis elegans IDA-1 protein...    28   4.8  
AF126740-1|AAK14908.1|  767|Caenorhabditis elegans IA2 protein.        28   4.8  
Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 6 protein.
          Length = 1396

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 410 YYIIIFWSVNSFCYYVKFLYCLSINHYSIHGVSNLGTS 297
           +Y  I WS+  FC  + FL  ++I  + +H    LG +
Sbjct: 233 FYAYILWSMFGFCCLLGFLVMMAIVSFQVHYSYQLGVN 270


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 126 LISYANNLIAICKNINEDYTKTNQVNKERYKIK 28
           LI+  +N  A  KN+  +YT+T Q+N+E  K K
Sbjct: 182 LINEQSNAKAELKNVVNEYTETRQINEELDKQK 214


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -2

Query: 416 LDYYIIIF-WSVNSFCYYVK--FLYCLSINHYSIHGV 315
           +DY  ++F  + N F Y+    FLY  ++NH S+HG+
Sbjct: 620 IDYEPLLFNKTTNRFEYFDSRGFLYFTAVNHLSVHGL 656


>U28971-8|AAD31046.2|  767|Caenorhabditis elegans Related to islet
           cell diabetesautoantigen protein 1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 162 ELHLKQYSQLLALISYANNLIAICKNINED 73
           ++HLK   QL+ LI +  N IAI  N+  D
Sbjct: 296 KVHLKNEDQLMPLIEFLQNTIAIPNNLYFD 325


>AJ245560-1|CAB52188.1|  767|Caenorhabditis elegans IDA-1 protein
           protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 162 ELHLKQYSQLLALISYANNLIAICKNINED 73
           ++HLK   QL+ LI +  N IAI  N+  D
Sbjct: 296 KVHLKNEDQLMPLIEFLQNTIAIPNNLYFD 325


>AF126740-1|AAK14908.1|  767|Caenorhabditis elegans IA2 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 162 ELHLKQYSQLLALISYANNLIAICKNINED 73
           ++HLK   QL+ LI +  N IAI  N+  D
Sbjct: 296 KVHLKNEDQLMPLIEFLQNTIAIPNNLYFD 325


>Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical
           protein C38C10.1 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 407 YIIIFWSVNSFCYYVKFLYCLSINHYSI 324
           Y++I+W   S C Y   +YC +   + I
Sbjct: 265 YLLIYWIAMSSCAYNPIIYCFANERFRI 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,234
Number of Sequences: 27780
Number of extensions: 229477
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)