Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H08
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.58 
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    29   0.58 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.1  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   5.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.5  

>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 84  LNIVIPGPQYPPTKGEVWPKPQIQVKD 164
           +N V PGP Y P     +PK +I++ D
Sbjct: 217 VNAVAPGPIYTPLVSSTFPKEKIELSD 243


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 545 IVCKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA-RCSQFHVQLLNC 369
           +V     LRP  Q ++  PY    ++ G    Q VA ++   + ++A R S  H +L + 
Sbjct: 315 LVTPAGRLRPHGQPNFEVPYTAYIYTRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSF 374

Query: 368 PLESFIVCSF 339
              SF   SF
Sbjct: 375 SNFSFTSVSF 384


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 491 GRYKRLGNLVATLLSYKRFQGIA 559
           G +  LGN+VAT  SY  FQG A
Sbjct: 305 GSFLVLGNVVATKGSYNTFQGEA 327


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 573 DIYDYPRYAHRGLLLDTSRH 632
           D YDYPRY+ R   L++ RH
Sbjct: 189 DYYDYPRYSER-KSLNSKRH 207


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 10  FSYFISICYGIYYCLVCMA 66
           F +FI   YG Y CL+ +A
Sbjct: 104 FIFFIEFSYGTYLCLIQLA 122


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 558 RINSTDIYDYPRYAHRGLLLDTSRHY 635
           R+NS+D++   RY  R + L+ ++++
Sbjct: 357 RMNSSDLFSKARYVRRAIQLEFNKNF 382


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 426 QSKGASRTVQSVPRATPELSLGIVHRLQLHHPNSCTDFLNS 304
           + K +S  + SVP A  +  +G+ +   L   N+ ++ LNS
Sbjct: 775 EDKLSSHLLDSVPNALRQAPIGLKNTNNLSERNASSNLLNS 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,841
Number of Sequences: 5004
Number of extensions: 63621
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)