Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H08
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 59 3e-09
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 58 5e-09
07_03_1000 - 23220878-23221821,23222164-23223001 53 2e-07
03_02_0187 - 6248226-6249226,6249296-6250148 48 9e-06
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 30 1.8
01_01_0275 - 2265650-2265904,2266044-2266204,2266381-2266588,226... 27 9.8
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Frame = +3
Query: 423 FGMDESYNLXXXXXXX-----XXXXXIWGVIRGLETWSQL--FYLTNDFRELRINSTDIY 581
FG+DESYNL ++G + LET+SQL F T+ EL+ I
Sbjct: 108 FGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRLIELQSAPWSIT 167
Query: 582 DYPRYAHRGLLLDTSRHYL 638
D PR+ +RGLL+DTSRHYL
Sbjct: 168 DMPRFPYRGLLIDTSRHYL 186
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 58.4 bits (135), Expect = 5e-09
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Frame = +3
Query: 372 VQELHVELTAPCEKLPYFGMDESYNLXXXXX---------XXXXXXXIWGVIRGLETWSQ 524
V +L V + + EKL G+DESY + I+G IRGLET+SQ
Sbjct: 101 VGKLTVVVASADEKLE-LGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQ 159
Query: 525 LFYLTNDFRELRINSTDIY--DYPRYAHRGLLLDTSRHYL 638
L D + + + Y D PR+A RGLLLDTSRH+L
Sbjct: 160 LCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFL 199
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 53.2 bits (122), Expect = 2e-07
Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 6/194 (3%)
Frame = +3
Query: 84 LNIVIPGPQYPPTKGEVWPKPQIQVKDDKYYTFD-PAVFTVKEPFQKCDFLTKALERYQF 260
L+ +P P VWPKP + + + F V P L+ A
Sbjct: 19 LSSPLPARCDAPLPVNVWPKPTSMSWAEPHMAVRVSSSFHVVAPSGNAHLLSAARRYAAL 78
Query: 261 LVRDLHR-ITRRFVKRSLGSQYRSLDDEAANDERFQGTVQELHVELTAPCEKLPYFGMDE 437
L+ + +R + V + G A V +LH AP + G+DE
Sbjct: 79 LLAERYRPLVTPAVNVTAGGAGAGAAGRGAELGYLTLAVSDLH----APLQH----GVDE 130
Query: 438 SYNLX---XXXXXXXXXXXIWGVIRGLETWSQLFYLTNDFRELRINS-TDIYDYPRYAHR 605
SY L WG +RGLET+SQL + R + + + + D P Y HR
Sbjct: 131 SYALEILPAGAAATVTAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRVEDRPLYPHR 190
Query: 606 GLLLDTSRHYLSLS 647
GL+LDT R Y ++
Sbjct: 191 GLMLDTGRTYFPVA 204
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +3
Query: 429 MDESYNLXX---XXXXXXXXXXIWGVIRGLETWSQLFYL----TNDFRELRINSTDIYDY 587
+DESY L WG IRGLET+SQL + + + + + +I D
Sbjct: 130 VDESYTLSVLPDSGSADISAATPWGAIRGLETFSQLAWAGGGAASGGQPIVPSGIEISDR 189
Query: 588 PRYAHRGLLLDTSRHY 635
P + HRG+LLDT+R++
Sbjct: 190 PHFTHRGILLDTARNF 205
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +3
Query: 138 PKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDLHRITRR--FVKRSL 311
P+P +KY + P +F K+ + L E + + +DL I +R ++
Sbjct: 543 PEPNQDFWKEKYISSLPPLFAEKKKKNEQPDLISLFEDQKIMKQDLEEIRKRLYMLESKE 602
Query: 312 GSQYRSLDDEAANDERFQGTVQE 380
G D+ D+ GT+Q+
Sbjct: 603 GFHMEEKDEPIQEDDHVVGTIQK 625
>01_01_0275 -
2265650-2265904,2266044-2266204,2266381-2266588,
2266959-2267112,2267557-2267650,2267814-2267919,
2268001-2268075,2268336-2268443,2268672-2268725,
2268818-2268910,2269111-2269206,2269682-2269723
Length = 481
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 96 IPGPQYPPTKGEVWPKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDL 275
+PG + + PK I + D+ + FD T +EP++ L K R Q +
Sbjct: 91 LPGMKQQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEG-GILFKGNLRGQ-PAKSY 148
Query: 276 HRITRRFVKRSLGSQYR 326
+IT R ++ G QY+
Sbjct: 149 EKITNR-LQNKFGDQYK 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,695,416
Number of Sequences: 37544
Number of extensions: 407954
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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