Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H08
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        35   0.066
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         29   3.3  
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              29   4.3  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   28   5.7  
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +3

Query: 507 LETWSQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSLS 647
           LET+SQ+ + + D          I DYPR+ HR  ++DTSRHYL LS
Sbjct: 244 LETFSQIVHQSEDGMYYA-KGNKIEDYPRFHHRAFMIDTSRHYLKLS 289



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 123 KGEVWPKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFL 263
           +G +WPKPQ +    + Y+  P+ F ++   +  D L  A+ RYQ L
Sbjct: 158 QGSIWPKPQHEQPTGQLYSLLPSEFRIEVLCKNSDVLQAAVIRYQKL 204



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 123 KGEVWPKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDLHRITRR 293
           +G +WP PQ Q  D K ++  P  F+     +  D L  A+ RY  L      +T++
Sbjct: 47  QGSIWPNPQAQKPDGKVFSLLPNKFSFSINGKTSDVLKAAVNRYMNLTFPDFTVTKK 103


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 504 GLETWSQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSL 644
           G+ET+SQL    +    L   S  I D P + HRGL+LDT R +  +
Sbjct: 27  GMETFSQLVVDGS----LVYTSVSISDKPSFVHRGLMLDTGRRFFPM 69


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 204 KEPFQKCDFLTKALERYQFLVRDLHRITRRFV------KRSLGSQYRSLDDEAANDERFQ 365
           KE F+KC+FLTK + R +    +  +  +R         +SL  +   L+DE  N  + +
Sbjct: 402 KEHFEKCEFLTKEMHRLKNEWSNKEKEYKRMATEQEKESKSLRKKNNQLEDELTNQGKSK 461

Query: 366 GTVQELHVE 392
               + H E
Sbjct: 462 EQEAQEHSE 470


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 458 CDGQVVAFIHAKVRELLARCSQFHVQLLNCPLESFIVCSFIIQTPVLTS 312
           C   VVAF+ + +R L+  C    V  L CPL   ++  F +    L S
Sbjct: 179 CFSVVVAFLLSPLRVLVLPCFSVVVAFLLCPLRVIVLPCFSVVVAFLLS 227


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 492  GVIRGLETWSQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYL 638
            GV  G++T   L  L +  +E  +    I D PRY +RG+ LD  R+++
Sbjct: 1085 GVFYGVQT---LIALAD--KENTVPMVTIKDAPRYGYRGMHLDVGRNFM 1128


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 539 CKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA 405
           CK + +   FQ S+ A Y+     S R  G ++ FIHAK+  LLA
Sbjct: 204 CKEKMMNVIFQTSWKAEYKI---KSTR--GDLLTFIHAKIYLLLA 243


>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = -1

Query: 518 PSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLARCSQFHVQ--LLN----CPLES 357
           PSF+ASY +  +C+C+++          +  K  +++  C    VQ  LL+    CPL S
Sbjct: 247 PSFRASYQSSMQCSCYNNNL---PAKCSMPCKDPQVIDLCGDIAVQQRLLSRQDPCPLHS 303

Query: 356 FIVCSFI-IQTPVLTS 312
               S I I+ P++ S
Sbjct: 304 LSDTSGISIRQPIVES 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,842,411
Number of Sequences: 59808
Number of extensions: 479293
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)