Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H07
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.0  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   7.9  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 160 CSHYFRLLLYFLSMVCTRKRSY 95
           CS    LL+ FL+MVC+ K  Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 23
           V TR+R  + R C +CR   ++   ++P + C
Sbjct: 20  VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 40   GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 141
            G+VS    YC   + PG  + V+  IP+  S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 141 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYE 28
           +YC +  W   +N   Y G +  A +F+S+   S  Y+
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYD 561


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 153  IILGYYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTPHV 10
            ++  ++C + PW  L  + +Y   V  A    SV + + H E+ TP+V
Sbjct: 1093 VLPAFFCHTDPWVSLAALEVY---VRRAYRAYSVLEINYHTEAGTPYV 1137


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 42  ICQLRTEILRHKEHPRRIYERLRVHTMDKKYN 137
           IC L   +  H  HP  IY   R+  + K YN
Sbjct: 78  ICSLFLSLKYHHLHPEYIYS--RISKLGKSYN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,650
Number of Sequences: 5004
Number of extensions: 33741
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)