Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H07
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0019 - 146078-146761                                             28   4.5  
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    27   6.0  
01_06_0349 - 28613059-28614240                                         27   6.0  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    27   7.9  
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    27   7.9  

>08_01_0019 - 146078-146761
          Length = 227

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 433 ESVGAQSD-ASLYVSLRSLG--VP*NLPPVCATHPAL*VKTPLITTTTV 296
           E VG   D A +Y   + L   VP +LPPV   HP L V +P ++   V
Sbjct: 96  ERVGIYYDRADVYAEYKGLRITVPTSLPPVYQGHPDLTVWSPFLSGNNV 144


>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 302 GCCDQGRLYL*CRVCSADGWKVLGDAERPERHIQRCITLGANT 430
           GCC    + L    C AD W  L D+ +     ++   LG NT
Sbjct: 40  GCCPCRVVVLPPDFCCADAWCALLDSGKDGASFEKFYILGTNT 82


>01_06_0349 - 28613059-28614240
          Length = 393

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 311 DQGRLYL*CRVCSADGWKVLGDAERPERHIQRCITL-GANTLXDPAP 448
           D G+L++ C++  + G  +   A++P     + + L G + L  PAP
Sbjct: 313 DDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAP 359


>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
            18875172-18877180,18877390-18877398,18880291-18880398,
            18880399-18880469,18880769-18881785
          Length = 1347

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 43   SVSYGPKYCGTRNIPGV-YTNVYEYIPWI 126
            +V   P +CG RN P + + NV E   WI
Sbjct: 1137 TVEGSPNFCGLRNFPSLTHVNVTESGEWI 1165


>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 410 CIFVCVAQVARRPLKPSTRLRYTPCTIGKDAPD 312
           C F+C+  V  RP K + + +  P  + +D+ D
Sbjct: 100 CTFICLVAVTMRPSKANQQDQNQPLLVREDSDD 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,041
Number of Sequences: 37544
Number of extensions: 222072
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)