Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H05
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 29 2.0
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 29 2.6
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 29 2.6
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 29 2.6
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 3.4
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814 28 4.6
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 28 6.0
03_02_0206 + 6402526-6403933,6405018-6405637 28 6.0
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491... 27 8.0
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 405 GLDSLILKYNFSVTSIPDSTMGMEATLDTTSSRGILAPFVFATVCL 268
G D+++L ++ + + + L TS R +L PF+FA CL
Sbjct: 57 GFDTVLLYWDKTAPGYCEKAGIYVSHLSQTSLRAVLKPFLFAATCL 102
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/95 (22%), Positives = 36/95 (37%)
Frame = +3
Query: 90 LYCK*RLNIKHKLK*AEWRQTGTCIKNVITAHALWALTKKSKVRSLRKPKHTFKPLTNPT 269
L K + + HK + A +R + V + + + + P+ F P
Sbjct: 420 LEAKHKEQVSHKRRLANFRNQQGANQRVRYTNPYLGGSSSQQQQPRSAPRPQFMPGQGRR 479
Query: 270 DIQWQRRKARGCRGSKLCQGSLPYPS*NQGLTSPK 374
D+Q Q+R C S+ + P P QG P+
Sbjct: 480 DVQGQQRLCFNCFESRHFEDKCPKPRRQQGQAPPR 514
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 311 LEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLATG 454
+E++ ++ SIP VE + + E+ + + S+ R+Y G+K + G
Sbjct: 269 IEIIDKLISIPYVEMTLRLMERFGVKAEHSDSWDRFYIKGGQKYKSPG 316
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 279 WQRRKARGCRGSKLCQGSLPYPS*NQGLTSP 371
W+ R RG R S C + +P + LTSP
Sbjct: 298 WESRHRRGSRSSARCAAAADHPGCSDKLTSP 328
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -2
Query: 268 VGFVSGLKVCFGFLSDRTFDFFVNAHNACAVITFFIHVPVCRHSAYFNLCLIFKRHLQY 92
V F+ GL ++ RT NA+ C V TF V H + LI+K+HL +
Sbjct: 435 VNFMMGLASIIVTIAFRTTTSIGNAYGICVVTTFM----VTTHLMTVVMLLIWKKHLVF 489
>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
Length = 582
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 167 KCYNGTCIVGVNKKVKGSIAKKAEAYLQAANKPHRHTV 280
+C++ C+VG + + +A + + A+ P RHT+
Sbjct: 242 RCHDHICLVGRRSRPRDEVAAEITLFYLGASVPLRHTL 279
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 445 RHGDSTCPASCSNVRDTD 498
RHG S+ P S SNVRD D
Sbjct: 148 RHGQSSEPQSSSNVRDED 165
>03_02_0206 + 6402526-6403933,6405018-6405637
Length = 675
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 278 VAKTKGARMPRLEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKS 442
V + K +P E R+A+I V+ + V + Y+ K+ ++ Y S+G S
Sbjct: 411 VKRLKDVDLPEPEFRERIAAIGAVQHELVVPLRAYYFSKDEKLLVYDYMSMGSLS 465
>03_02_0011 -
4909292-4909434,4909520-4909626,4910100-4910171,
4910713-4910803,4911136-4911272,4911377-4911417,
4911681-4911746,4912756-4913082
Length = 327
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 161 YKKCYNGTCIVGVNKKVKGSIAKKAEAYLQAANKPHRHT 277
Y +C NGT I+ V S + ++ + AA K H+ T
Sbjct: 251 YSQCENGTEIINVQNSWLSSNSNVPKSPVNAAEKSHQST 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,223
Number of Sequences: 37544
Number of extensions: 349746
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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