Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H05
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)                       33   0.22 
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_57868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_21969| Best HMM Match : DUF1381 (HMM E-Value=4)                     29   3.5  
SB_32538| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_39820| Best HMM Match : PKD (HMM E-Value=8.7e-07)                   28   4.7  

>SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 323 SRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLATGIQLALPAVQ 481
           SR+  +P+V + ++   ++Y  +KE N + +     GE +L+     + P +Q
Sbjct: 28  SRLYELPVVMAAMEQLSQIYGNVKERNAVTKKVCEAGESTLSVATAASKPLIQ 80


>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 774

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 396 NPTL*SDGISHLVRNLSPRGFNLPCQLFKCSRHRSTSSISFYASRSMLWRRECL 557
           NPTL  +  SH++    P G  LP ++   S   S  S+S    R  LW  E L
Sbjct: 250 NPTLMFNKDSHMILGGKPDGVTLPPEIDTPSYVGSIDSLSINHYRVGLWNAENL 303


>SB_57868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 186 ALWALTKK---SKVRSLRKPKHTFKPLTNPTDIQWQRRKA 296
           +LW+ ++K   SKV+ L++  + F+ +    +++WQ+R A
Sbjct: 146 SLWSKSEKKYSSKVKGLKRTVNKFEVMLEDLEVKWQKRFA 185


>SB_21969| Best HMM Match : DUF1381 (HMM E-Value=4)
          Length = 130

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 186 ALWALTKK---SKVRSLRKPKHTFKPLTNPTDIQWQRRKA 296
           +LW+ ++K   SKV+ L++  + F+ +    +++WQ+R A
Sbjct: 66  SLWSKSEKKYSSKVKGLKRTVNKFEVMLEDLEVKWQKRFA 105


>SB_32538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 363 SIPDSTMGMEATLDTTSSRGILAPFV 286
           S+PD+T   + T++ T+S  +L P V
Sbjct: 102 SLPDNTQACDVTINATTSASVLGPHV 127


>SB_39820| Best HMM Match : PKD (HMM E-Value=8.7e-07)
          Length = 430

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 150 TGTCIKNVITAHALWALTKKSKVRSLRKPKHTFKPLTN--PTDIQWQRRK 293
           T TC   + TAH +  +T +  +R+LR  K   +P+ N    ++ W   K
Sbjct: 60  TATCTNRITTAHDVTRITIQEPIRNLRFNK--VEPIINGKSFNVSWNHEK 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,259
Number of Sequences: 59808
Number of extensions: 412971
Number of successful extensions: 3133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3132
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)