Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H05
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39870.1 68415.m04899 expressed protein                             32   0.31 
At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase, pu...    30   0.95 
At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi...    28   3.8  
At2g45300.1 68415.m05638 3-phosphoshikimate 1-carboxyvinyltransf...    28   5.0  

>At2g39870.1 68415.m04899 expressed protein
          Length = 330

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 342 PS*NQGLTSPKNCT-SESRNPTL*SDGISHLVRNLSPRGFNLPCQLFKCSRHRSTSSIS 515
           PS + G TSP + T +E  +     D ++ L R L+P    LP  LFK    R  ++ S
Sbjct: 42  PSFSPGFTSPGDSTETEDESSDDEEDFLAGLTRRLAPSTQRLPSPLFKSEEKRQVAATS 100


>At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR4) identical
           to N-terminal partial sequence of xyloglucan
           endotransglycosylase-related protein XTR4 GI:1244754
           from [Arabidopsis thaliana]; similar to endoxyloglucan
           transferase [Arabidopsis thaliana] GI:5533311
          Length = 343

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 23  LLRRYR*MNLKKSNQA*HTAKSFILQMTFEYQAQIKISGMATNGDVYKKCYN 178
           LL RY       SN   H   S ++++  +Y A + ++   +NGDV++K ++
Sbjct: 57  LLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHD 108


>At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 704

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 77  TAKSFILQMTFEYQAQIKISGMATNGDVYKKCYNGTCIVGVNKKVKGSIAKKAEAYLQ 250
           T K+  +    E   QI  S +  N D Y    +G C  G+    KG + K   + LQ
Sbjct: 469 TLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQ 526


>At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 851

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 98  QMTFEYQAQIKISGMATNGDVYKKCYNGTCIVGVNKKVKGSIAKKAE 238
           Q   E    +  S +  NG VY+   NG C VG   K +  +A   E
Sbjct: 530 QNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIE 576


>At2g45300.1 68415.m05638 3-phosphoshikimate
           1-carboxyvinyltransferase /
           5-enolpyruvylshikimate-3-phosphate / EPSP synthase
           nearly identical to SP|P05466
          Length = 520

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +2

Query: 311 LEVVSRVASIPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLATG 454
           +E+V ++ S+P VE  + + E+    ++ S+   R++   G+K  + G
Sbjct: 274 IEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFVKGGQKYKSPG 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,247,020
Number of Sequences: 28952
Number of extensions: 291195
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)