Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H04
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             215   4e-56
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       122   3e-28
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        56   3e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          46   3e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               36   0.042
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  215 bits (524), Expect = 4e-56
 Identities = 100/164 (60%), Positives = 121/164 (73%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 533
           +   LFK+L KYRPET                   +E P K+P  ++ G N +T LVE K
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENK 150

Query: 534 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 665
           KAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +V
Sbjct: 151 KAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVV 194


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  122 bits (294), Expect = 3e-28
 Identities = 58/100 (58%), Positives = 69/100 (69%)
 Frame = +3

Query: 366 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQL 545
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 546 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 665
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +V
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVV 103


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           LR G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 477 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 644
           +  TLR G   V K + K +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           L  G +   K ++K++A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 38  LSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 34/115 (29%), Positives = 47/115 (40%)
 Frame = +2

Query: 104  DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 283
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 284  GCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQARN*GSQERASKESRRSQG 448
              VT SS+     +P H   R      S       Q R   S  R  ++ RRS+G
Sbjct: 1035 QRVTKSSKERPRKRPRHQS-RERRPSSSPPRRSRPQ-RTSPSPRRTPEDRRRSRG 1087


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 110 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 205
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 237 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 386
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,546,851
Number of Sequences: 59808
Number of extensions: 390835
Number of successful extensions: 913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)