Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H04
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   195   2e-50
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           195   2e-50
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    49   3e-06
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    49   3e-06
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    48   5e-06
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    46   2e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    43   2e-04
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    36   0.026
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    36   0.026
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)            35   0.045
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)            35   0.045
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)            35   0.045
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    28   6.8  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  195 bits (476), Expect = 2e-50
 Identities = 96/164 (58%), Positives = 116/164 (70%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 533
            A  LFKIL KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 82  LATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQN 140

Query: 534 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 665
           KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+V
Sbjct: 141 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVV 184


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  195 bits (476), Expect = 2e-50
 Identities = 95/164 (57%), Positives = 116/164 (70%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 533
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVTYLIEQN 141

Query: 534 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 665
           KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+V
Sbjct: 142 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVV 185


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           L+ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           L+ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           L+ G N  TK + +  ++ +V+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 653
           L+ G   V K + + +  L VIA ++ PI+++  LP LC + GVPY  V  K  L
Sbjct: 51  LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 507 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           + TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 73  SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           G +   KL+EK+ AQLVV+A D +  + V  + ALC    V    V     LG
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           G +   KL+EK+ AQLVV+A D +  + V  + ALC    V    V     LG
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99


>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           G +   KL+EK+ AQL V+A D +  + V  + ALC    +    V     LG
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           G +   KL+EK+ AQL V+A D +  + V  + ALC    +    V     LG
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 656
           G +   KL+EK+ AQL V+A D +  + V  + ALC    +    V     LG
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 528 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVTVRLHERRS 692
           KK  Q V  A  + P+E   +L  L  ++ + Y   K   R  ++V  RL +RRS
Sbjct: 80  KKWRQTVFNASTITPLEHCQWLNKLLSEIWLNYMNKKLSLRFSSMVEKRLRQRRS 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,957
Number of Sequences: 28952
Number of extensions: 272607
Number of successful extensions: 716
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)