Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H02
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 29 0.56
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 1.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 3.0
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 26 4.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 4.0
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 4.0
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 6.9
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 6.9
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.1
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 227 NELHHSGWNVCSSCHDNPDMKRNFLILPALHSCNVFVMD 343
+EL+H WN H NP + L++ + + +V D
Sbjct: 473 DELYHGEWNTVPGHHKNPKCRAKKLVVESRNGRREYVQD 511
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -1
Query: 287 SYQGCHDNWNI 255
+YQGC+D+WNI
Sbjct: 538 AYQGCNDDWNI 548
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 116 AVQPDKSKQDYLATVDVNPKSPTYSQVIYRTYTGSVDNELH 238
A+ P+ + +T+D +P +Q Y+ Y G N H
Sbjct: 1303 AIAPESANAALTSTIDKTTGAPELAQKKYKVYVGQGKNMPH 1343
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 354 SVPTSITNTLQECSAGNMRK 295
S+ + N L ECS G+MRK
Sbjct: 201 SMEPGVVNALVECSGGDMRK 220
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -3
Query: 492 PFSSLSPIVEIMISPVA-----RQCVVCGKL-QLNDLISEPSITLCN 370
PFSSLSP++ + I +A V C KL QL +S P N
Sbjct: 540 PFSSLSPVILLTICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRN 586
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 4.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 50 PGYASPLDAFNNGPR--EEILYVVAVQPDKSKQDYLATVDVNPKSPTYSQVIYRTYTGSV 223
P Y L ++ P E+ L + D + Q + +NP+SP+ + YR+ G V
Sbjct: 531 PSYVGSLPQYHGNPSFVEQALQDLVQPTDSASQIF----PLNPQSPSQFTIKYRSIAGRV 586
Query: 224 DNELHHSGWNVCS 262
+ L G N S
Sbjct: 587 -HRLRLDGINSVS 598
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 483 SLSPIVEIMISPVARQCVVCGKLQLNDLISEPSITLCN 370
S S + +++ +A CV GK + NDLI IT N
Sbjct: 604 SSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLN 641
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 RTYTGSVDNELHHSGWNVCSSCHDNP 280
R YTGS+DN +H N S+ + +P
Sbjct: 103 RFYTGSLDNTIHCWDLNGLSATNPHP 128
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 304 YEKIPFHIRVVMTTGTYIPSAMMKLVINAPRVCTIDYLAI 185
Y+K+ ++I V++ PS+ +L+++A CTI+ + I
Sbjct: 445 YQKLEYNILVLLNEK---PSSGSQLILSASPTCTIENIYI 481
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 213 RGALITSFIIADGMYVPVVMTTLI*KGIFSYYLRCILAMYLLWTLVLILESQDY 374
R +I+ FI+ ++P+V+ L+ KG+ R ++ L + + +Q+Y
Sbjct: 1326 RRCIISIFIVFFISFLPLVVHDLLEKGVIRAVARLCKQIFSLSPMFEVFVTQNY 1379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,471
Number of Sequences: 5004
Number of extensions: 52886
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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