Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_H02
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 192 2e-49
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 31 0.43
11_01_0606 + 4831102-4833033 29 3.0
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878... 29 3.0
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 5.3
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645... 28 5.3
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 28 5.3
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 27 9.2
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 192 bits (467), Expect = 2e-49
Identities = 93/169 (55%), Positives = 116/169 (68%), Gaps = 7/169 (4%)
Frame = +2
Query: 35 SCC---KGPGYASPLDAFNNGPREEILYVVAVQPDK--SKQDYLATVDVNPKSPTYSQVI 199
+CC GPGYA+PL+A GPRE++LYV V +K DYL TVDV+P SPTYSQVI
Sbjct: 9 ACCGGATGPGYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPNSPTYSQVI 68
Query: 200 YRTYTGSVDNELHHSGWNVCSSCHDNPDMKRNFLILPALHSCNVFVMDVGTDPRKPRLHK 379
+R V +ELHHSGWN CSSCH +P R FLILP+L S V+V+D DPR P LHK
Sbjct: 69 HRLPVTHVGDELHHSGWNACSSCHGDPSASRRFLILPSLLSGRVYVVDTLKDPRAPALHK 128
Query: 380 VIDGSEM-RSFNCSFPHTTHCLATGEIMISTMGDKEENGKGD-LVLIDS 520
V++ ++ FPHT+HCLA+GEIMIS +GDKE N G+ +L+DS
Sbjct: 129 VVEAEDIAEKTGLGFPHTSHCLASGEIMISCLGDKEGNAAGNGFLLLDS 177
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 200 YRTYTGSVDNELHHSGWNVCSSCHDNPDMKRNFLILPALHSCNVFVM 340
Y +T + + LHH GW+ SC N + + L P C+ + M
Sbjct: 165 YSNFTATFTSSLHHHGWSTNGSCTTNGRVNSDGL-CPGTACCDAYGM 210
>11_01_0606 + 4831102-4833033
Length = 643
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 414 QLNDLISEPSITLCNLGFLGSVPTSITNTLQE 319
QLN L S+ L + GF G +PTS+ +L+E
Sbjct: 181 QLNYLPKLRSLNLSSNGFEGPIPTSMVTSLEE 212
>05_03_0131 +
8779006-8779073,8779517-8779662,8779739-8780794,
8781070-8781232,8781423-8781494,8782076-8782147,
8782643-8782815,8782958-8783163,8783277-8783403,
8783793-8783864,8783984-8784176,8784298-8784768,
8785635-8785740
Length = 974
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 293 SFSYQGCHDNWNIHSIRYDEARYQRSPCMYDRLPGYMSV 177
SF + H + H IRY RY R Y+ +PG+ V
Sbjct: 243 SFGFNRFHFGTDEHHIRYPVDRYDRFWQRYEDIPGWEDV 281
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 122 QPDKSKQDYLATV-DVNPKSPTYSQVIYRTYTGSVD-NELHHSGWNVCSSCHDN-PDMKR 292
Q D S + + V D N + PT +Y+ G++D NEL G ++ S+ +N PD +
Sbjct: 468 QQDNSLMNTQSHVHDENLQPPTKHSTVYKR-KGNLDHNELMQPGKSISSAYKNNKPDNQD 526
Query: 293 NFLI 304
N+++
Sbjct: 527 NYMV 530
>04_04_1138 -
31162440-31163488,31163910-31164164,31164386-31164500,
31164523-31164579,31164580-31164632,31164721-31164981,
31165243-31165293,31165395-31165430,31165815-31166040,
31166082-31166132,31166346-31166465
Length = 757
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 136 AFVWLYSDHIKDFFSRSIIESI*W 65
A++ + DH+ D F RSI +SI W
Sbjct: 305 AYIIAHKDHVADAFYRSIPDSIYW 328
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 122 QPDKSKQDYLATV-DVNPKSPTYSQVIYRTYTGSVDNELHHSGWNVCSSCHDN-PDMKRN 295
Q D S + + V D N + PT +Y+ NEL G ++ S+ +N PD + N
Sbjct: 465 QQDNSLMNTQSHVHDENLQPPTKHSTVYKRKGNLDQNELMQPGKSISSAYKNNKPDNQDN 524
Query: 296 FLI 304
+++
Sbjct: 525 YMV 527
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 454 FAGCQAVCRVRETAVE*PHLRTVDYFM*SWLSRISTNVHNKYI 326
FA C + C+V+E A + VD WL ++ +V KY+
Sbjct: 211 FANCASKCKVKEAAPYERVVSLVDQLQ-PWLRILAEDVSRKYL 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,835,153
Number of Sequences: 37544
Number of extensions: 340774
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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