Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H02
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_59462| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)                   28   5.4  
SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)          27   7.2  

>SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = +2

Query: 83  NGPREEILYVVAVQPDK--SKQDYLATVDVNPKSPTYSQ 193
           +GPRE+I+Y+  +  +   +K DYLATVDV+P SPTYSQ
Sbjct: 2   SGPREQIVYLPCIHNNTPINKPDYLATVDVDPTSPTYSQ 40


>SB_59462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 299 LILPALHSCNVFVMDVGTDPRKPRLHKVIDGSEMRSFNCSF-PHTTHCLATGEIMISTMG 475
           L++P  H  N  + D   + RK +  K  +  E R F   F P  +HC     I ++ + 
Sbjct: 56  LVVPPSHDNNRDIADSTLNNRKKKRRKNPNEEESRVFQEHFFPEPSHCTRDKRIQVNLLE 115

Query: 476 DKEEN 490
             E+N
Sbjct: 116 GSEKN 120


>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 266 CHDNPDMKRNFLILPALHSCNVFVMDVGTDPRKPRLHKVIDGSE 397
           C +N   ++NF +  ++    V ++ +  +P+K R+   +DGSE
Sbjct: 86  CKENKRSEQNFCVARSVQHRPVELIKMSEEPKKSRVVIAVDGSE 129


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 365  PRLHKVIDGSEMRSFNCSFPHTTHCLATGEIMISTMGDKEENGKGD 502
            P+L      S +R  +C   H+   L++GE+    +G+    G GD
Sbjct: 1565 PKLIDTFKSSCVRDMSCGSSHSAAILSSGELYTWGLGEYGRLGHGD 1610


>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
          Length = 568

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 329 HCKNAAQVI*ENSFSYQGCHDNWNIHSIRYDEARYQRSPCMYDRLPGYMSV 177
           H  N+ +++    F   GCHD + I   RY ++  +  P    R PG   V
Sbjct: 424 HVTNSPELMYSFKFMLAGCHDEYCIQR-RYQDSAARDGPDYPRRQPGIRQV 473


>SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 503 DPLSHFPPYHPSLKS 459
           DP+ HF PYHPSL+S
Sbjct: 232 DPM-HFSPYHPSLQS 245


>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 89  PREEILYVVAVQPDKSKQDYLATVDVNPKSPTYS 190
           P +++   VAV P+ S  D     + NP SPT S
Sbjct: 359 PEQKVPDYVAVSPEMSSSDSYIADESNPASPTGS 392


>SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)
          Length = 396

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 215 GSVDNELHHSGWNVCSSCHDNP 280
           G  +N ++H  W    SC+DNP
Sbjct: 111 GRQENSINHGSWVRPESCYDNP 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,500,639
Number of Sequences: 59808
Number of extensions: 405574
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)