Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_H02
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14040.1 68417.m02169 selenium-binding protein, putative cont...   176   9e-45
At4g14030.1 68417.m02168 selenium-binding protein, putative cont...   174   3e-44
At3g23800.1 68416.m02991 selenium-binding family protein contain...   171   2e-43
At3g14240.1 68416.m01803 subtilase family protein contains simil...    27   5.8  
At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    27   5.8  
At5g57820.1 68418.m07231 hypothetical protein                          27   7.7  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    27   7.7  
At2g35060.1 68415.m04301 potassium transporter family protein si...    27   7.7  

>At4g14040.1 68417.m02169 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); similar to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]
          Length = 487

 Score =  176 bits (428), Expect = 9e-45
 Identities = 82/167 (49%), Positives = 117/167 (70%), Gaps = 5/167 (2%)
 Frame = +2

Query: 38  CCK-GPGYASPLDAFNNGPREEILYVVAVQ--PDKSKQDYLATVDVNPKSPTYSQVIYRT 208
           CCK GPGYA+PL A   GPRE+++YV A+     + K DYLATVDV+P SPT+S VI+R 
Sbjct: 19  CCKSGPGYATPLAAM-AGPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSVIHRL 77

Query: 209 YTGSVDNELHHSGWNVCSSCHDNPDMKRNFLILPALHSCNVFVMDVGTDPRKPRLHKVID 388
               + +ELHH+GWN CSSCH +    R +L+LP L S  ++ +D  TDP+ P L+KV++
Sbjct: 78  KMPYIGDELHHTGWNSCSSCHGDASADRRYLVLPGLISGRIYAIDTKTDPKAPSLYKVVE 137

Query: 389 GSEM-RSFNCSFPHTTHCLATGEIMISTMGDKEENGKGD-LVLIDSN 523
             E+      +FPHT+HCLA+G++++S +GDKE N KG+  +L+DS+
Sbjct: 138 PKEIAEKTGLAFPHTSHCLASGDMLVSCLGDKEGNAKGNGFLLLDSD 184


>At4g14030.1 68417.m02168 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); identical to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]; identical to cDNA from partial
           mRNA for selenium binding protein (sbp gene) GI:15485231
          Length = 490

 Score =  174 bits (424), Expect = 3e-44
 Identities = 85/168 (50%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
 Frame = +2

Query: 38  CCK--GPGYASPLDAFNNGPREEILYVVAVQPDKS--KQDYLATVDVNPKSPTYSQVIYR 205
           CCK  GPGYA+PL A + GP E+++YV AV       K DYLATVDV+P SP+YS VI+R
Sbjct: 21  CCKYGGPGYATPLAAMS-GPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHR 79

Query: 206 TYTGSVDNELHHSGWNVCSSCHDNPDMKRNFLILPALHSCNVFVMDVGTDPRKPRLHKVI 385
                V +ELHHSGWN CSSCH +  + R +L+LP+L S  ++ +D   +PR P L+K +
Sbjct: 80  LPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYV 139

Query: 386 DGSEMR-SFNCSFPHTTHCLATGEIMISTMGDKEENGKGD-LVLIDSN 523
           D  E+      +FPHT HCLATGEI++S +GD+E N KG+  +L+DS+
Sbjct: 140 DPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSD 187


>At3g23800.1 68416.m02991 selenium-binding family protein contains
           Pfam profile: PF05694 56kDa selenium binding protein
           (SBP56)
          Length = 480

 Score =  171 bits (416), Expect = 2e-43
 Identities = 80/166 (48%), Positives = 118/166 (71%), Gaps = 5/166 (3%)
 Frame = +2

Query: 38  CCK-GPGYASPLDAFNNGPREEILYVVAVQPD--KSKQDYLATVDVNPKSPTYSQVIYRT 208
           CCK GPGYA+PL A + GPRE+++YV A+     ++K DYLATVDV P S TYS VI+R 
Sbjct: 12  CCKSGPGYATPLLAMS-GPREKLIYVAAIYTGTGQAKPDYLATVDVEPSSSTYSSVIHRL 70

Query: 209 YTGSVDNELHHSGWNVCSSCHDNPDMKRNFLILPALHSCNVFVMDVGTDPRKPRLHKVID 388
               +++ELHHSGWN CSSC+ +   +R +LILP+L S  ++V+D  T+PR+P LHK +D
Sbjct: 71  PMPYLEDELHHSGWNSCSSCYGDSSCERRYLILPSLLSGRIYVIDTKTNPREPSLHKFVD 130

Query: 389 GSE-MRSFNCSFPHTTHCLATGEIMISTMGDKEENGKGD-LVLIDS 520
            +E +     ++PH  HCLA+G++++S +GD++ N +G   +L+DS
Sbjct: 131 PAEVLEKTGLAYPHQPHCLASGDVLVSCLGDEDGNAEGSGFLLLDS 176


>At3g14240.1 68416.m01803 subtilase family protein contains
           similarity to SBT1 GI:1771160 from [Lycopersicon
           esculentum]
          Length = 775

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 183 VGDFGLTSTVAK*SCLLLSGCTATT*RISSLGPLLKASNGDA*PGPLQQDILNKQNT 13
           +G  G+TS   +    +LSG +     +S L  LLKA++ D  P  ++  ++    T
Sbjct: 528 IGPSGVTSDNRRTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYT 584


>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 473 PSLKS*FRRLPGSVSCAGNCS*MTSSPNRRLLYVIL 366
           PSL     +LP +V+C+G C  M +  +++ L  +L
Sbjct: 218 PSLSCPHNKLPCTVTCSGACGSMGAGQHKKALLELL 253


>At5g57820.1 68418.m07231 hypothetical protein
          Length = 161

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 263 SCHDNPDMKRNFLILPALHSCNVFVMDVGTDPRKP 367
           S H   D+   F++    HSC++   D+  DP +P
Sbjct: 81  SSHIRDDLDMVFVLEEVGHSCDLCQRDLAKDPERP 115


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +2

Query: 38  CCKGPGYASPLDAFNNGPRE-EILYVV---AVQPDKSKQDYLATVDVNPKSPTYSQVIYR 205
           C  G G A  +  F + P E   LY     AV   +S  DY A + + P SP+   V+  
Sbjct: 342 CKDGTGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAALSLLPGSPSGVSVMSP 401

Query: 206 TYTGSVDNELHHS 244
               +  N + HS
Sbjct: 402 LSPSAAGNGMSHS 414


>At2g35060.1 68415.m04301 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter HAK2p [Mesembryanthemum crystallinum]
           gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 792

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 136 AFVWLYSDHIKDFFSRSIIESI*W 65
           A++  Y DH+ D F RSI  S+ W
Sbjct: 349 AYIRRYPDHVADAFYRSIPGSVYW 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,754,502
Number of Sequences: 28952
Number of extensions: 276100
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)