Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G23
(241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 56 6e-10
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 56 6e-10
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 26 0.58
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 1.8
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 24 2.3
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 24 2.3
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 24 3.1
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 24 3.1
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 23 4.1
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 23 4.1
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 23 4.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 5.4
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 23 5.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 23 7.1
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.1
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 23 7.1
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 22 9.4
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 22 9.4
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz... 22 9.4
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 22 9.4
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 22 9.4
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 22 9.4
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 56.0 bits (129), Expect = 6e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +3
Query: 81 KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 239
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DK
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDK 65
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 56.0 bits (129), Expect = 6e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +3
Query: 81 KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 239
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DK
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDK 65
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 0.58
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -1
Query: 238 LSFDTLSNSIALFSYCACPTTS 173
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +2
Query: 29 RNWSAKRPQNDKDIRWQKGY 88
+NW PQ + W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 111 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAME 215
RPA L+ ++T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 226 TLSNSIALFSYCACPTTSRTKSRTNLEC 143
T+++S LF+ A T+ TKS N+EC
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVEC 877
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 3.1
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +3
Query: 48 GHKTTKISAGKKGITDKAIKIRPARLKGI------QTKHSKFV-RDLVREVVGHAQYEKR 206
G+ K S TDK I+P LKG+ TK ++ + RDL+R V+G E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788
Query: 207 AME 215
++
Sbjct: 789 EIK 791
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/52 (21%), Positives = 22/52 (42%)
Frame = +3
Query: 39 LRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 194
L+K ++ +G + ++P L G + KF +RE+ H +
Sbjct: 359 LKKDSDFKEVPSGDINLESAIALVKPTILLGCSGQPGKFTEKAIREMSKHVE 410
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 133 MPFSLAGLILMALSVIPFLPADIFVVLW 50
M F A +I LS +PF+ D+ +LW
Sbjct: 139 MSFWGATVITNLLSAVPFIGDDLVHLLW 166
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +3
Query: 39 LRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY 197
L+K ++ +G + I+P L G + KF +RE+ H ++
Sbjct: 22 LKKDSDFKEVPSGDIDLETAISLIKPTVLLGCSGQPGKFTEKAIREMSKHVKH 74
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 75 GKKGITDKAIKIRPARLKGIQT 140
GKK D ++++PA L G T
Sbjct: 4 GKKDYIDSPLRMQPASLSGAST 25
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 132 IQTKHSKFVRDLVREVVGHAQY 197
IQ HSKF +L +EV+ Y
Sbjct: 1038 IQGNHSKFTTNLQKEVIISPHY 1059
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 200 LILCVPNNFTNQI 162
LI CVPNNF ++
Sbjct: 1135 LIRCVPNNFLRKV 1147
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 7 SWLPDLKSQLVC 42
SWL DL S LVC
Sbjct: 635 SWLSDLFSNLVC 646
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 98 FVCNTLFASGYLCRFVAFSQTNCDF 24
++ TLF YL FVA S + DF
Sbjct: 289 YIILTLFHMEYLFSFVASSWSTLDF 313
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 133 MPFSLAGLILMALSVIPFLPADI 65
M FS++G+I+ + IP + AD+
Sbjct: 655 MFFSISGMIVFNMMGIPMVGADV 677
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 99 LCL*YPFCQRISLSFCGLFADQLRFQIGEP 10
LC P IS +F LF+ QLR G+P
Sbjct: 179 LCCSNPMKFIISTNFGRLFSVQLRDPAGQP 208
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 162 DLVREVVGHAQYEKRAMELLKVSKD 236
DLV+E + +E+R LL+ SKD
Sbjct: 125 DLVQEDLRDLVFEERKAILLETSKD 149
>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 218 QFHCPLLILCVPNNFTNQIADKLRVFGLN 132
Q P LC+ N F A+ + V+GL+
Sbjct: 173 QSRIPFPWLCLINGFIGAFAEAMDVWGLD 201
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 139 PNTLSLSAIWFVKLLGTHSMRRGQW 213
PN ++ + I LG HS+R QW
Sbjct: 131 PNAMNAAEI--TDKLGLHSLRHRQW 153
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 210 LPSSHTVRAQQLHEPNR 160
LPSS VR + H+P R
Sbjct: 170 LPSSRMVRLSKAHQPLR 186
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 230 RYFEQFHCPLLILC 189
RYF FHC +LC
Sbjct: 19 RYFHSFHC-FFLLC 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,609
Number of Sequences: 5004
Number of extensions: 18474
Number of successful extensions: 59
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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