Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G23
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 62 8e-11
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 60 2e-10
07_03_0078 - 13147741-13148913 32 0.074
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 28 0.92
07_03_0079 + 13169773-13170861 27 2.1
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 2.8
09_06_0068 - 20661060-20661506,20662702-20662824,20663513-206637... 26 4.9
08_01_1033 - 10461135-10461377,10462124-10462354,10465853-104663... 25 8.5
02_05_0522 - 29744368-29745534 25 8.5
02_01_0411 - 2998806-3000938 25 8.5
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 61.7 bits (143), Expect = 8e-11
Identities = 35/75 (46%), Positives = 43/75 (57%)
Frame = +3
Query: 15 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 194
P+ + +G+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 195 YEKRAMELLKVSKDK 239
YEKR ELLKV KDK
Sbjct: 56 YEKRITELLKVGKDK 70
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 60.5 bits (140), Expect = 2e-10
Identities = 34/75 (45%), Positives = 43/75 (57%)
Frame = +3
Query: 15 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 194
P+ + +G+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 195 YEKRAMELLKVSKDK 239
YEKR ELLKV KDK
Sbjct: 56 YEKRITELLKVGKDK 70
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.074
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 118 AGLILMALSVIPFLPADIFVVLWPF 44
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 28.3 bits (60), Expect = 0.92
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -1
Query: 232 FDTLSNSIALFSYCACPTTSRTKSRTNLECLV*MPFSLAGLILMALSVIPFLPADIFVVL 53
F +N++ +S C CP +R CL F+LA ++ +SV FLP ++ L
Sbjct: 326 FGECTNTLGSYS-CMCPRGARGDPSIPQGCLEKDKFTLALKVVTGVSVGVFLPLLMYFCL 384
Query: 52 W 50
+
Sbjct: 385 Y 385
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 118 AGLILMALSVIPFLPADIFVVLWP 47
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 42 RKGHKTTKISAGKKGITDKAIKIRPARL 125
RKGHK +ISA K+ T + +K P L
Sbjct: 81 RKGHKCDRISAEKRANTVELMKKMPQML 108
>09_06_0068 -
20661060-20661506,20662702-20662824,20663513-20663770,
20665635-20666027
Length = 406
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 42 RKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 194
R+G TT +SA +D + +RPA T + + L E GH Q
Sbjct: 21 RRGSTTTTVSAVSTSRSDDSGAVRPASKSTGSTSSHRSISSLYEE-RGHGQ 70
>08_01_1033 -
10461135-10461377,10462124-10462354,10465853-10466336,
10466566-10466822
Length = 404
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 22 LKSQLVCEKATKRQRYPLAKR--VLQTKPLKLGQLG*RAFKPNTLSLSAIWFVKLLGTHS 195
L+S V + Q++P + VL+ L L + P TL +SA +L +++
Sbjct: 122 LRSSAVARRRRSLQQFPRNRAFGVLELNTPNLRSLKMCCYAPGTLRISAPRLEELRSSNN 181
Query: 196 MRRGQWNC 219
+ +W C
Sbjct: 182 VIDMRWQC 189
>02_05_0522 - 29744368-29745534
Length = 388
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 121 LAGLILMALSVIPFLPADIFVVLWP 47
+A L+ AL +IP LP+ + WP
Sbjct: 70 VAALLYFALVMIPVLPSGMEFAAWP 94
>02_01_0411 - 2998806-3000938
Length = 710
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 182 NNFTNQIA--DKLRVFGLNAL*PSWPNFNGFVCNTLFASGYL 63
N FT ++A + + L AL SW NFNG + ++++ L
Sbjct: 325 NKFTGELAKVNFSNLPNLKALDFSWNNFNGTIPESIYSCSNL 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,853,625
Number of Sequences: 37544
Number of extensions: 115101
Number of successful extensions: 264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -