Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G23
         (241 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.                79   2e-15
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...    79   2e-15
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...    79   2e-15
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...    79   2e-15
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...    79   2e-15
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.                28   4.6  
U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.                28   4.6  
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.              28   4.6  
BC071958-1|AAH71958.1|  516|Homo sapiens nucleolar complex assoc...    28   6.1  
BC007893-1|AAH07893.2|  494|Homo sapiens NOC4L protein protein.        28   6.1  
BC001191-1|AAH01191.1|  516|Homo sapiens nucleolar complex assoc...    28   6.1  
AK074489-1|BAC11020.1|  344|Homo sapiens protein ( Homo sapiens ...    28   6.1  
BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.        27   8.0  
AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif prote...    27   8.0  
AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif prote...    27   8.0  
AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif prote...    27   8.0  
AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.     27   8.0  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = +3

Query: 9   MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 188
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 189 AQYEKRAMELLKVSKDK 239
           A YE+RAMELLKVSKDK
Sbjct: 51  APYERRAMELLKVSKDK 67


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = +3

Query: 9   MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 188
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 189 AQYEKRAMELLKVSKDK 239
           A YE+RAMELLKVSKDK
Sbjct: 51  APYERRAMELLKVSKDK 67


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = +3

Query: 9   MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 188
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 189 AQYEKRAMELLKVSKDK 239
           A YE+RAMELLKVSKDK
Sbjct: 51  APYERRAMELLKVSKDK 67


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = +3

Query: 9   MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 188
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 189 AQYEKRAMELLKVSKDK 239
           A YE+RAMELLKVSKDK
Sbjct: 51  APYERRAMELLKVSKDK 67


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = +3

Query: 9   MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 188
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++REV G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 189 AQYEKRAMELLKVSKDK 239
           A YE+RAMELLKVSKDK
Sbjct: 51  APYERRAMELLKVSKDK 67


>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
          Length = 6669

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 99   AIKIRPARLKGIQT---KHSKFVRDLVREVVGHAQYEK 203
            A K RP    G QT   KH+K V+D+V E     QYEK
Sbjct: 5200 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 5237


>U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.
          Length = 3007

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 99   AIKIRPARLKGIQT---KHSKFVRDLVREVVGHAQYEK 203
            A K RP    G QT   KH+K V+D+V E     QYEK
Sbjct: 1631 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 1668


>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
          Length = 2802

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 99   AIKIRPARLKGIQT---KHSKFVRDLVREVVGHAQYEK 203
            A K RP    G QT   KH+K V+D+V E     QYEK
Sbjct: 1333 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 1370


>BC071958-1|AAH71958.1|  516|Homo sapiens nucleolar complex
           associated 4 homolog (S. cerevisiae) protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 106 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGTHSMRRGQW 213
           +LG+L G  +F+   L+LSA+  FV+L G H + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139


>BC007893-1|AAH07893.2|  494|Homo sapiens NOC4L protein protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 106 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGTHSMRRGQW 213
           +LG+L G  +F+   L+LSA+  FV+L G H + + +W
Sbjct: 80  RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 117


>BC001191-1|AAH01191.1|  516|Homo sapiens nucleolar complex
           associated 4 homolog (S. cerevisiae) protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 106 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGTHSMRRGQW 213
           +LG+L G  +F+   L+LSA+  FV+L G H + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139


>AK074489-1|BAC11020.1|  344|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90008 fis, clone HEMBA1000275. ).
          Length = 344

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 106 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGTHSMRRGQW 213
           +LG+L G  +F+   L+LSA+  FV+L G H + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139


>BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.
          Length = 1271

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 63  KISAGKKGITDKAIKIRPARLKGIQTKHSKF 155
           K+S+G   I  K IKI  A  KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561


>AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif protein
           16 protein.
          Length = 1271

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 63  KISAGKKGITDKAIKIRPARLKGIQTKHSKF 155
           K+S+G   I  K IKI  A  KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561


>AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif protein
           16 protein.
          Length = 1271

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 63  KISAGKKGITDKAIKIRPARLKGIQTKHSKF 155
           K+S+G   I  K IKI  A  KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561


>AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif protein
           16 protein.
          Length = 1271

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 63  KISAGKKGITDKAIKIRPARLKGIQTKHSKF 155
           K+S+G   I  K IKI  A  KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561


>AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.
          Length = 1330

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 63  KISAGKKGITDKAIKIRPARLKGIQTKHSKF 155
           K+S+G   I  K IKI  A  KG++T++ +F
Sbjct: 590 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 620


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,297,161
Number of Sequences: 237096
Number of extensions: 637872
Number of successful extensions: 5020
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5015
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1325257374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)